Gene detail

Detail information of GWHGAAEX009208/evm.TU.scaffold_24.37

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0700	4.00E-146	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
nr	gi\|672161013\|ref\|XP_008800303.1\|	0	PREDICTED: protein phosphatase 2C 32 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8RWN7\|P2C32_ARATH	2.00E-173	Protein phosphatase 2C 32
trEMBL	tr\|A5C2V8\|A5C2V8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83867.1}
TAIR	AT2G46920	4.00E-146	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000021	1840935	1858447	-

Transcript Sequence
>GWHTAAEX009208 ACTGAAACCACTGTCCACGCTTCAGAATTTAAAAACCCCAAGAAAGGGACCCTTTGCTCAGGCTTCCATGAGGCCGAACTGAGCTCACCGCCAACTATCTGTTTCGTCCTCCATGACTTCATTCACATCCTAATCCACTCACCTGCTACACAGATCAGAACAAAACCCCGCCATTTCTTCTTCTTATTATCCATATGAATTGTTTTCTGCTCAGTCATTCTCATCGCGTTTCACTGTAGATCTGTTTTCCGGGGCGGCGCGGGATTCGTGGTTGCACGATAGAGATCTTGTCAGTTATTCGTGAAGAGATGGCTGATGCTCATGATGCAAAGGCAACTGCAAAGGATTCCATTGGCTGTGAGATTTTGTGGGTTTTTGGGGTTTCTCTTGCCTGAGTACACGACTAGCTCGCTGCTTCCATGATCACAGTTATAAGAGAGTGTTGATGCCGATTCTTGATTGCTTAGATTTTGGTGGGTAGGTTATGGGAAATAGCGCTTCTAGGGTTGCTGGCTGCTTCAGGCCATTTTGCAATGGCAAAGATTCTGTTAATCTGGAGTTCTTAGAGCCATTGGATGAAGGTTTAGGTCATTCCTTCTGCTATGTTCGGCCGGTGACCACTGATTCTCCGGCCTTAACACCGTTCACTTCTGATAGGTATACAGCATGTTCGAGCACAGTTGATACTGAGACACAGTGTGGGTCTTTTAGGCAGGAAGTGATAGTAGAAGATCTTGTTAGCCTACAAAGACCTAGCTGCAGTTTGCCTGAAACCACCTTTAAGACCATTTCTGGAGCTTCGGTTAGTGCTAATGCCTCCAGTGCTAGGACTGGTGGCAATCTTAACTTGATGCTCTCCGGAGAAATCCTGCAGCCCGCAGCTTCTTTTGAAAGCACAGCTTCCTTTGCCGCCATTCCTTTGCAGCCAGCACCCAGAGGTTCTGGACCATTGAATGGCTTCATGTCTGGACCTTTGGAGAGAGGGTTTGCTTCAGGACCTTTGGAGAGAGGAGCAGGATTCATGTCAGGGCCTTTAGATAAGGGACTCATCATTCCTGATTCAATTGATAATACGGTTAGAAGCAAATATTCAGATCCGCTCAGTAATGCATATGAAAAAGTGGGAATCAAACAGCTCGTGAAGCACATGGGCAAACCAATGAGAATCGCCTTTACTCGGACCTTTACAAAGCCCTATGGCTCTGGATGGATTCAAAAGCTTATTATGTGTCTGCTGACACAATTAGTTAGCCATACAAATGAGGAAAAATTCAAGCACAATTCTTCAAAGAACTATGCTGAGACTGGGACAACTGAGCCTAAGTATAGCAATATGAAAAAAGTGCAATGGGCTCATGGCAAGGCTGGGGAGGATAGAGTTCATGTAGTTCTTTCTGAAGAACAAGGTTGGCTGTTTGTTGGAATTTATGATGGTTTTAGTGGCCCTGATGCTCCAGATTTTCTTATGAGCAACCTTTACAAGGCAATAGATAAAGAATTGGAAGGTTTACTATGGGATTATGGAAAAGAATGTGAGGAGAACTCACCTTCAGCTGCTCTTCCTTCAAGCAAATCTTTTTCTACTTGTTCAAATGTTGTCACTGATAAGCATAATGCAAATTGCCAACTATGCAGCGATCTCTCTAAAGACCAAAACACCCAAGATATTTCCATTTATCAGTCACAAAAATATAAATGTGGAGTGAAGCCTACTAATGAAGGTGACTTAAACACCGAATCAACACAAGGCAATGAAAAAATTGAATTAAAAAATTTAGATTGCCAGGTCATATCAAATGAGAAAAACAAGGATCAGAATTTAAAACCAATTAAAAGAAATGTAACCTCAGTTGGCGAAGCTAATAATCTACAAGGAAAGTTTGTTGTTTATGCTCCATCTGATAACACATTAATGCAACCCAGGAATAGCATGCATCTTTATGAGCTTCTTCAAATGGAGCTTGTTGAAAACTTGAAGGCAAAGGGCTCTATGTTGGCATTAGATGCAGGATGCGGGAGATCTTGTGATTCACCATCACATTTAAATAGCTCTAAGCTGGTTTCCTGTTCCACAAATATCAGGGTAGGAAGCCCAGATTATATTGAAAAGGACCTCAGTTTACTAGGAACTGAAGGTGATTTGGAGGAGGAACTCGCAGATCTGAAGGAACAGAACATACCTCCTTTTTCAGCATTGGGACAAAAGAAGCTCAAAAGATCACTGGCTAGATCCACGTTAAAAAGAATGTGCTGGAAGAAGAAATCTTTACTAAAAAAACTTTTCCCATGGAGTTATGATTGGCACAGAGAACAACTTCATGTAGATGAGGGCACAATTAACTCATCAGTAGCAATTTGGAAATGCAAATCAGGTCCTGTTGACCATGATGCTGTAATGAAGGCAATGACAAGAGCACTTGAGATAACTGAGGAGGCTTATGTTGACATGGTGGAAAAGGCACTTGATAGAAATCCAGAACTAGCACTGATGGGCTCCTGTGTTCTTGTCATGTTAATGAAGGATCGTGATGTGTACATTATGAACCTTGGTGACAGTCGTGTTGTCTTGGCACAGGATAGGCTAAGTGATCGCAATGGCAGTTCTGTACTTACAAAAGATGATTCAAGATTCCAAAGCAGATCAAGGGAGTCAATTGTTCGTGTGGAACTTGACAGGATATCGGAGGAGTCTCCTATGCGTAATCCAACTAGTCATGTTTTCTGTGCTAACAGGAACCACGAGATCTCCATTTGCAAATTGAAGTTGAGGGCTGTTCAGCTGTCTACTGATCACAGTACCAGCATTGAGGAAGAAGTTCTGAGAATTAAAGCTGAGCATAGTGATGATCCTCAAGCTATTTTAAACGAGAGAGTAAAGGGTCAATTAAAAGTTACTAGAGCTTTTGGAGCCGAATTTCTCAAACAGCCAAGGTTTAATGAGGCTCTGCTGGAGATGTTTCGGGTTGACTACGTCGGATCTTCCCCGTACCTCAGCTGCGAGCCGTCCGTGGTTCATCACCGCCTTTGCTCAAATGACCGCTTCTTAGTCCTTTCCTCCGATGGCCTCTACGAGTACTTCAGCAACGAAGAGGTGATTTCCCATGTCGCTTGGTTTATCGACAACTTCCCTGACGGGGATCCCGCTCAGTACCTCATCGCCGAATTGCTCTTCCGCGCCGCCAAGAAAAATGGAATGGATTTTCACGAGTTGCTCGATATTCCGCATGGCGATAGAAGGAAGTACCATGATGATGTTTCTGTAATGGTAATTTCCTTAGAAGGAAGGATCTGGAAATCATCCGGTTGACTTTTCTATTATTCTGTTTATTCAGGGCTGTGGGTTTACCTGGTTAATTTAGGTTTAAACACTCTCTGTTCTAATCCCATATTTCCTTAATCTTATTTGAAGAAACCTATTGCAGTAATTTCTTAGCTGTTAAATTATATAAATAGGAAACAAATAAGACCAATGAAATCTCTTGCTCATTAAGCTATGCCGAGTGTATCAAGCCCTTTCATGAAGTGAAG

Network for GWHGAAEX009208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	756	900	6.40E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.860
SRP064423	SRR2545915	Juvenile tuber	29.200
SRP108465	SRR5643513	five period of Gastrodia elata	32.170
	SRR5643514	five period of Gastrodia elata	20.020
	SRR5643515	five period of Gastrodia elata	22.900
	SRR5643524	five period of Gastrodia elata	24.010
	SRR5643525	five period of Gastrodia elata	11.930
	SRR5643528	five period of Gastrodia elata	9.540
	SRR5643658	five period of Gastrodia elata	20.940
	SRR5643659	five period of Gastrodia elata	12.920
	SRR5643660	five period of Gastrodia elata	11.770
	SRR5643661	five period of Gastrodia elata	13.950
	SRR5643662	five period of Gastrodia elata	12.400
	SRR5643663	five period of Gastrodia elata	12.670
	SRR5643664	five period of Gastrodia elata	10.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.080
SRP279888	Gastro	Gastrodia elata tuber	9.59
	Juven	Juvenile tuber	20.38
	Mother_Gastro	Mother tuber of Gastrodia elata	13.55
	Mother_Juven	Mother tuber of Juvenile	18.86