Gene detail

Detail information of GWHGAAEX009213/evm.TU.scaffold_24.50_evm.TU.scaffold_24.51

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297621203\|ref\|YP_003709340.1\|	1.00E-20	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
KOG	KOG0698	1.00E-153	Serine/threonine protein phosphatase
nr	gi\|743843836\|ref\|XP_010938175.1\|	0	PREDICTED: probable protein phosphatase 2C 47 [Elaeis guineensis]
Swissprot	tr\|Q9FYN7\|P2C02_ORYSJ	7.00E-163	Probable protein phosphatase 2C 2
trEMBL	tr\|M0SCV8\|M0SCV8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P08410_001}
TAIR	AT3G62260	1.00E-153	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000021	2197835	2201146	+

Transcript Sequence
>GWHTAAEX009213 AATTTCTCCACTTTCTAAACAAGCACAGCACGCGGCTCCAAATAACCGCGGAGCACTCACGCGGCGAAAATATCGCTGCGGCCCATAAATTGGTTCTTCTATGCGACATATCCGCTTCACACGTGCCGGTCACCGCTCAACAATCACCGGTCGCCGTCGGTTGTCCAGGTCTCTATAAATTCCGACCCGCCTGCTTTTTCCTCTCAATTTGGCAAACTACCGAGTCGAGTCCAACCCGCGAAGTAAGAAGAGGCGTAAAAGAGTTGCCGGGAAAACCCTAGAGGTGAGAGATCGAAGATGGTTGCTGGAGCGGAGGTTTTCCATCACAGTATCACGGTTCTTGATGTTCAGTATCGGTGCATCTCGAAGGAGATCGAGGAGATTGCTGATTTATCGGCGACGGCTGTGTCGCCTGCTGCGTCTCCGCCTTTGTTCCGCCAAGCGGCTCGGGTGTCCAATCCGGTTCCGGTTGAGATCTCAGTTGCTTCTGAGCTGGATTTGAGAATCTCAGATGCCACTCCTAATGATTTAGAACCAATAAATTTTCCATTCATACCTAGCATCAGATCTGGAAGTTTTGCTGATATCGGTCCTCGAAGGGACATGGAAGACGAACACATACGCATAGATGATCTGTCTGCGTATCTCGGATCTACATTGACTTGCCCTTCTCCGAGCGCCTTTTACGGAATATTTGATGGCCATGGAGGTCCAGATGCAGCAGCCTATATAAAAAGGAATGCATTCAGGCTTTTCTTTGAAGATGTTGAATTTCCACAAGCATCAGAAGCCAACTCAGTCTTTATAGAGTCTGTGGAGAACTCGGTGCGGAAAGCATTTCTTCTTGCAGACCTTGCTTTAGCTGATGACTGCACCATCAGTACATCCTCGGGAACAACTGCTCTTGCCGCTCTGATTTTTGGAAGGCTTCTATTGGTAGCGAATGTGGGGGATTGCCGGGCGGTATTATGCCGGAAGGGCAAAGCGGTTGATATGTCGCAGGATCACAGACCCATCCATGAGGACGAGAGGCGAAGGGTAGAGGAATGTGGGGGGTACATTGATGATGGCTACCTTAATGGGATGCTCTCCGTGTCCAGAGCGCTTGGAGACTGGGACATCAAGACCCCCCGGGGCTCGCCTTCCCCCCTTATCGCTGAGCCTGAGTTCATGCAGGTGGCGCTGATGGAGGATGACGAGTTTCTGATCATCGGGTGTGACGGAATATGGGACGTAATGTCGAGCCAGCACGCTGTGAACGTCGTGAGGAGGGAGTTGCGGCGGCACGATGATCCGGAGAGGTGCGCGAGGGAGCTTGTGATGGAAGCGCTGAGGCTCAACACGTTCGATAACCTCACCGTAATCGTTGTTCGTCTTTCGGCCGATCATTGGGATTCCGCTCCTATGAGATTGAGGAGCTGTAGTTTATCGACTGAGGCGCTCTGCAGCTTGAGGAGTTGGCTAGAGAGGGATGATGGAGCGAACAGGAAGAGCGGAAAATGATGATGAATGGAGAGGTGGGTGTATAGATTGTCATTAGAGATGAAGACCAATGATGATGATGAAAATGTAATTGTTGCCTCATTAGGGCTGCTTTTGTGAGATTTTCATGTTTTATGAGAGCAGCCAGCATTTTTGTAGGCTTTTTTTTTATCATTGTGGGCTGGATTAGTATTTGTGTATATAATTGGTGATTGCAGATGAGGCGGTTTTTGGAAATGGCACATTGATGTTTATATAGATAGCATTTAGTCATTATGCATTTTATTGTTGAAAGGAAATCACTACTGTTTGTGCACATATTGCTTAAGTGAAGCAGTTATCACATGTTAAATAGTGTATGGTGCACATATTGCCGCGTGTATCTATGGTGTTCTCAAACGATTTTTAATGTTTATATGCTTATAATGCCGTATCGTTCAGATTTCCTTTGAGATTAAGGTTGGGAATATAATTGTGCATTACTGTGATTGAGCTCTATGTTATTTCATCCTCTGCGGTTATATTTTTGATGGTTATTTTCGTCTCTGCATTTATTGTTTTTTGTGATCAAGGAGTGTCGGAACTCTTTTTATTAGACATCTTATGATTCTCTTTGATACCAACTGTAATGCCCTAAAGGTAGCTTATCTTAACTTATCATCAGTAACAAGCTTAATTGATTGAGATCGAATGAGCTTTCTTTGATTACTTCCTTTGAAGGCTAATTCTTAAAATAATTATAATTTTTATCTTTAAAGTATTAATTATCTCATCC

Network for GWHGAAEX009213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module13

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	100	352	2.40E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity
GO:0043169	Molecular Function	cation binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.280
SRP064423	SRR2545915	Juvenile tuber	25.710
SRP108465	SRR5643513	five period of Gastrodia elata	55.130
	SRR5643514	five period of Gastrodia elata	39.830
	SRR5643515	five period of Gastrodia elata	97.750
	SRR5643524	five period of Gastrodia elata	32.600
	SRR5643525	five period of Gastrodia elata	215.300
	SRR5643528	five period of Gastrodia elata	75.110
	SRR5643658	five period of Gastrodia elata	100.670
	SRR5643659	five period of Gastrodia elata	72.960
	SRR5643660	five period of Gastrodia elata	51.610
	SRR5643661	five period of Gastrodia elata	58.640
	SRR5643662	five period of Gastrodia elata	89.930
	SRR5643663	five period of Gastrodia elata	67.700
	SRR5643664	five period of Gastrodia elata	389.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	188.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	89.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	117.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	120.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	113.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	142.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	269.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	156.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	70.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	230.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	119.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	119.290
SRP279888	Gastro	Gastrodia elata tuber	57.72
	Juven	Juvenile tuber	22.58
	Mother_Gastro	Mother tuber of Gastrodia elata	126.70
	Mother_Juven	Mother tuber of Juvenile	79.82