Detail information of GWHGAAEX009214/evm.TU.scaffold_24.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|85373572|ref|YP_457634.1|3.00E-10syrP protein [Erythrobacter litoralis HTCC2594]
nrgi|720079459|ref|XP_010241670.1|5.47E-24PREDICTED: clavaminate synthase-like protein At3g21360 [Nelumbo nucifera]
Swissprottr|Q9LIG0|Y3136_ARATH9.00E-13Clavaminate synthase-like protein At3g21360
trEMBLtr|U5D2X9|U5D2X9_AMBTC3.00E-22Uncharacterized protein {ECO:0000313|EMBL:ERN19971.1}
TAIRAT3G213603.00E-122-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002124215212421820+
Transcript Sequence

Network for GWHGAAEX009214

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02668.15TauD10582.10E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016491Molecular Functionoxidoreductase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.850
SRR2545915Juvenile tuber1.300
SRP108465SRR5643513five period of Gastrodia elata14.190
SRR5643514five period of Gastrodia elata7.840
SRR5643515five period of Gastrodia elata3.260
SRR5643524five period of Gastrodia elata4.030
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata1.190
SRR5643664five period of Gastrodia elata0.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_187.340
SRR6049655Rhizomagastrodiae_C368-T10_good_166.300
SRR6049656Rhizomagastrodiae_C368-T07_good_1173.020
SRR6049657Rhizomagastrodiae_C368-T07_good_153.270
SRR6049658Rhizomagastrodiae_C368-T04_good_1131.700
SRR6049659Rhizomagastrodiae_C368-T04_good_1106.100
SRR6049660Rhizomagastrodiae_C368-T01_good_174.270
SRR6049661Rhizomagastrodiae_C368-T04_good_1103.010
SRR6049662Rhizomagastrodiae_C368-T01_good_1193.060
SRR6049663Rhizomagastrodiae_C368-T01_good_1188.710
SRR6049664Rhizomagastrodiae_C368-T10_good_1221.800
SRR6049665Rhizomagastrodiae_C368-T10_good_1221.800
SRP279888GastroGastrodia elata tuber 56.39
JuvenJuvenile tuber2.24
Mother_GastroMother tuber of Gastrodia elata 60.16
Mother_JuvenMother tuber of Juvenile 0.00