Detail information of GWHGAAEX009222/evm.TU.scaffold_24.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1476 | 3.00E-135 | Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 |
| nr | gi|743877973|ref|XP_010908069.1| | 2.61E-149 | PREDICTED: probable beta-1,4-xylosyltransferase IRX9H [Elaeis guineensis] |
| Swissprot | tr|Q9SXC4|IRX9H_ARATH | 2.00E-140 | Probable beta-1,4-xylosyltransferase IRX9H |
| trEMBL | tr|M0SQP9|M0SQP9_MUSAM | 1.00E-143 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P20860_001} |
| TAIR | AT1G27600 | 3.00E-135 | Nucleotide-diphospho-sugar transferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000021 | 2969756 | 3015217 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009222
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03360.15 | Glyco_transf_43 | 178 | 386 | 6.20E-73 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT43 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015018 | Molecular Function | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.490 |
| SRR2545915 | Juvenile tuber | 8.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.570 |
| SRR5643514 | five period of Gastrodia elata | 3.930 | |
| SRR5643515 | five period of Gastrodia elata | 4.900 | |
| SRR5643524 | five period of Gastrodia elata | 3.390 | |
| SRR5643525 | five period of Gastrodia elata | 7.730 | |
| SRR5643528 | five period of Gastrodia elata | 8.000 | |
| SRR5643658 | five period of Gastrodia elata | 6.600 | |
| SRR5643659 | five period of Gastrodia elata | 5.350 | |
| SRR5643660 | five period of Gastrodia elata | 5.780 | |
| SRR5643661 | five period of Gastrodia elata | 6.310 | |
| SRR5643662 | five period of Gastrodia elata | 6.510 | |
| SRR5643663 | five period of Gastrodia elata | 6.230 | |
| SRR5643664 | five period of Gastrodia elata | 7.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.97 |
| Juven | Juvenile tuber | 4.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.20 | |
| Mother_Juven | Mother tuber of Juvenile | 6.99 |