Gene detail

Detail information of GWHGAAEX009236/evm.TU.scaffold_24.105

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|397690143\|ref\|YP_006527397.1\|	2.00E-112	RNA methyltransferase, TrmA family [Melioribacter roseus P3M-2]
KOG	KOG2187	0	tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
nr	gi\|743799439\|ref\|XP_010925476.1\|	0	PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Elaeis guineensis]
Swissprot	tr\|Q8L7S3\|C3H24_ARATH	1.00E-20	Zinc finger CCCH domain-containing protein 24
trEMBL	tr\|M0S9D6\|M0S9D6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P19450_001}
TAIR	AT3G21300	0	RNA methyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000021	5761241	5773532	+

Transcript Sequence
>GWHTAAEX009236 GCTACTCTTCCGTTTAATAGAATAAGAACCGCCTTCTGACGATCGTTGATGGCGGTCTCCCCCTCTGCTGGATACTTTGGAGCGAGCCGTCTGACAGTACATCAATGGAGGCTAGCCATGCAATGCTCGTGTTTCTCTTCTCATTCCTCGGTCGAGCCATCCGCATCCCTTCCCGCTCCCGCAGAATCTTCCTCTTGCTCATTCTTCCCCAAACGAAATCAAGTGCTTGAGCTCGTCTGCGAATCTCTTGCCTTCAAAGGAACAGGGGTTTGCAAGGTGGCCGACAGCGGCTTCGTTGTCATGTGCGATCGCGCTCTTCCTGGGGAGCGTTTTCTCGGCCGCGTGTCTCGCAAGAAGGGGAACTATGCCGAGGTGACGAAGCTGAAGACAATCACTCCACATCAGGACTTGGTTGAGGCGCCATGTGCATATTCGTCTTATTGTGGGGGTTGCAAGACTCAGAATCTTTCTTATGAGGCACAGTTGAAGGCCAAGGAGCAGCAAGTTCTAGAGTTAATCATTCGTGTGGGTGGTTTTTCTAGCAAGGACTGTGAGAAAGATCGTATTTTCAAACCTATTGTACCCTGTGACCTGAAGTTTCACTACCGAAACAAGATGGAGTTCTCCTTTGGTGCTAAGAGGTGGGAGCTTGGTAAAGATGCTCTCAAGGGTGACCAGGATTTGATTGAGAATGATTATGCATTGGGATTGCATGCACCTGGATTTTTTGATAAGGTACTTCACATTGGCAAATGTTTGCTGCAAAGTGAAGCTGCTAATAAGGTTCTTGGAATTGTTCAAGCTTGCTGGAGAGATCCAAACCTTGAACTTTCTCCTTATGATCCTCATACCCACAGTGGCTTTCTTAAACACCTGATGCTGAGAACCGGAAGGGATAAAAGGACTGGTGTTGCAGAAGTTATGGTTAATTTTGTAACATCAAGCTATAAACCTGATTTGCTGAGGCCTCTAGTTGGGAAGATTTCTACTATTCCAGAAGTGGTTAGTGTCATGAACAATGTAAATACATCTGTTGGCAATACATCTGTTGGGGAGCAAGAATACACTCTTTATGGAAAATCAACCATAAACGAAGTTTTAAGAGGACTCACGTTTCACGTGTCAGCAAACTCATTTTTCCAGACGAATTCTTACCAGGCTGAAGTTTTGTACAAGTTGATAGAAGATTCAGCTAATATCAAGGGAGATCAGTCAGAGATCGTGTTGGATCTTTTTTGTGGAACTGGAACTATTGGATTGACTCTTGCAAGAATGGTGAAGCATGTCTATGGATATGAAGTTGTAAAGCAAGCAGTGTCAGATGCTCGTCGAAATGCTGAGCTCAATGGCATTAATAATGCTACATTTATGGAAGGAGATCTTAATAAAATTGATGATAGTTTTGGGAAAAGCTTCCCAAGACCTGACATAATCATCTCAGATCCCAATCGCCCTGGCATGCACCTGAAGCTCATCAAGTATATGCTCGATCTTCGTGCATCACGTATAGTCTATATCTCTTGCAATCCAGCAACCTGTGCGCGTGACCTCAACTACCTTTGCCATGGCCTGGCTGAGAAAAACATAAGAGGGTGCTATCAATTGAAGAGCGTGCAGCCTGTTGACATGTTCCCTCATACGCCTCACATTGAGTGCATCTGTGTGCTGGAGCTCTCTTAGTCTCTCTGAAGATTTTTTTTACGTGGTCGGCAGAATTTGAACTATTTATCTATAAAAGGTTCAAACCCAAGAACTCAACTATTGAGCCATGACATCATTCACTCACCGAAGCTTTTCAATGGTTTGTTATTCTTATGAAAATGTTTTTGCAGAA

Network for GWHGAAEX009236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05958.10	tRNA_U5-meth_tr	352	541	1.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0008173	Molecular Function	RNA methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.370
SRP064423	SRR2545915	Juvenile tuber	2.370
SRP108465	SRR5643513	five period of Gastrodia elata	1.960
	SRR5643514	five period of Gastrodia elata	2.530
	SRR5643515	five period of Gastrodia elata	2.590
	SRR5643524	five period of Gastrodia elata	2.670
	SRR5643525	five period of Gastrodia elata	2.590
	SRR5643528	five period of Gastrodia elata	2.980
	SRR5643658	five period of Gastrodia elata	2.470
	SRR5643659	five period of Gastrodia elata	2.880
	SRR5643660	five period of Gastrodia elata	4.260
	SRR5643661	five period of Gastrodia elata	4.340
	SRR5643662	five period of Gastrodia elata	3.400
	SRR5643663	five period of Gastrodia elata	3.760
	SRR5643664	five period of Gastrodia elata	3.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.250
SRP279888	Gastro	Gastrodia elata tuber	10.00
	Juven	Juvenile tuber	4.11
	Mother_Gastro	Mother tuber of Gastrodia elata	6.96
	Mother_Juven	Mother tuber of Juvenile	5.33