Detail information of GWHGAAEX009239/evm.TU.scaffold_24.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292493898|ref|YP_003529337.1| | 0 | sucrose synthase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG0853 | 0 | Glycosyltransferase |
| nr | gi|720047184|ref|XP_010270734.1| | 0 | PREDICTED: sucrose synthase 7-like [Nelumbo nucifera] |
| Swissprot | tr|Q6K973|SUS6_ORYSJ | 0 | Sucrose synthase 6 |
| trEMBL | tr|B9SJX1|B9SJX1_RICCO | 0 | Sucrose synthase {ECO:0000256|RuleBase:RU280817} |
| TAIR | AT1G73370 | 0 | sucrose synthase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000021 | 6365102 | 6369475 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009239
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00862.18 | Sucrose_synth | 1 | 288 | 2.40E-177 |
| PF00534.19 | Glycos_transf_1 | 299 | 500 | 7.00E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00695 | E2.4.1.13 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005985 | Biological Process | sucrose metabolic process |
| GO:0016157 | Molecular Function | sucrose synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.260 |
| SRR2545915 | Juvenile tuber | 2.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.410 |
| SRR5643514 | five period of Gastrodia elata | 3.520 | |
| SRR5643515 | five period of Gastrodia elata | 3.790 | |
| SRR5643524 | five period of Gastrodia elata | 3.930 | |
| SRR5643525 | five period of Gastrodia elata | 1.740 | |
| SRR5643528 | five period of Gastrodia elata | 1.460 | |
| SRR5643658 | five period of Gastrodia elata | 0.890 | |
| SRR5643659 | five period of Gastrodia elata | 1.300 | |
| SRR5643660 | five period of Gastrodia elata | 1.330 | |
| SRR5643661 | five period of Gastrodia elata | 0.920 | |
| SRR5643662 | five period of Gastrodia elata | 0.900 | |
| SRR5643663 | five period of Gastrodia elata | 1.090 | |
| SRR5643664 | five period of Gastrodia elata | 0.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.98 |
| Juven | Juvenile tuber | 1.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.56 | |
| Mother_Juven | Mother tuber of Juvenile | 1.70 |