Detail information of GWHGAAEX009240/evm.TU.scaffold_24.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1041 | 0 | Translation initiation factor 2C (eIF-2C) and related proteins |
| nr | gi|743775858|ref|XP_010918321.1| | 0 | PREDICTED: protein argonaute 1A-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q7XSA2|AGO1B_ORYSJ | 0 | Protein argonaute 1B |
| trEMBL | tr|M0SEG4|M0SEG4_MUSAM | 0 | Protein argonaute {ECO:0000256|RuleBase:RU361178} |
| TAIR | AT1G48410 | 0 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000021 | 6370044 | 6411869 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009240
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12764.6 | Gly-rich_Ago1 | 186 | 283 | 1.60E-08 |
| PF16486.4 | ArgoN | 303 | 437 | 1.60E-34 |
| PF08699.9 | ArgoL1 | 447 | 497 | 8.30E-23 |
| PF02170.21 | PAZ | 505 | 631 | 1.70E-28 |
| PF16488.4 | ArgoL2 | 642 | 688 | 5.80E-14 |
| PF16487.4 | ArgoMid | 699 | 773 | 2.30E-10 |
| PF02171.16 | Piwi | 793 | 1052 | 1.70E-82 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11593 | ELF2C, AGO | Axon regeneration | map04361 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 87.300 |
| SRR2545915 | Juvenile tuber | 56.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 68.490 |
| SRR5643514 | five period of Gastrodia elata | 59.290 | |
| SRR5643515 | five period of Gastrodia elata | 59.130 | |
| SRR5643524 | five period of Gastrodia elata | 69.600 | |
| SRR5643525 | five period of Gastrodia elata | 23.710 | |
| SRR5643528 | five period of Gastrodia elata | 21.190 | |
| SRR5643658 | five period of Gastrodia elata | 23.070 | |
| SRR5643659 | five period of Gastrodia elata | 54.580 | |
| SRR5643660 | five period of Gastrodia elata | 56.140 | |
| SRR5643661 | five period of Gastrodia elata | 47.830 | |
| SRR5643662 | five period of Gastrodia elata | 41.830 | |
| SRR5643663 | five period of Gastrodia elata | 48.120 | |
| SRR5643664 | five period of Gastrodia elata | 47.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 98.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 69.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 80.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 116.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 117.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 137.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 113.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 108.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 68.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 78.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 58.06 |
| Juven | Juvenile tuber | 151.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.61 | |
| Mother_Juven | Mother tuber of Juvenile | 105.14 |