Gene detail

Detail information of GWHGAAEX009241/evm.TU.scaffold_24.118

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2593	2.00E-161	Transcription initiation factor IIE, alpha subunit
nr	gi\|695041058\|ref\|XP_009408126.1\|	0	PREDICTED: general transcription factor IIE subunit 1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0TEP3\|M0TEP3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P04530_001}
TAIR	AT1G03280	2.00E-161	Transcription factor TFIIE, alpha subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000021	6693444	6728391	-

Transcript Sequence
>GWHTAAEX009241 GAAAAAAAGAGAGCTTCAGTAGCATGCTTCATACAAAATTAATGTCATTTTTAGACTAGTCTGAACAATGGTTGCCTGCAGCTCAAGCGGTAACCCGTACATCCCATCTCCTTTTCGGACGCCGGATTTTCTCGCCACAACTATAAATCCATTGATCGCTTCGCGGTCATGGATCAAAGCTCTTCCCCACAAACATACCTAACCATATAGACTATGTACCTGGAATTCATTGTTATTTTCACGGATAGCACTTGCATCTTGATAACACTCAAGCAAGCACACCCTTTTTTTCATACTTAATTAGTCTTTTAACTTATGGTTCGTGCCGACATCCAATCTGGAAATTCTGTTGATCTCAAGCGTCCTTGCTGATCGCCATCTCGCTGAAAGTCGATTCGGAATTCTGACGTTCCTGGGGTTTTTCTTCAGCTTTAAGAAAATACTTCTTAATCTAGGGTTTGCAGGACACCCAAGTGCCCTTATTGGAATATTATCTCTGGATCCTGTATTCTACAATGAGTAGTTTTGAGCCTTTCAACAGGTTGGTGAGGCTTGCAGCTCGGGCCTTCTACGATGACATTACCATGAAAGGCGATAATCAGCCAAAAACAGGGCGTAGCGATAACAGGGGAATGACAGTGGTTGTTTTGGATGCACTCACCAGACGACAATGGGTTAGAGAGGAAGATTTGGCTAAAGCTTTGAAGTTGCATTCTAAACAGCTTCGTCGCACATTGAGATTTTTTGAGGAAGAGAAGTTGGTTACAAGAGAACACAGGAAAGAGACTGCCAAGGGCGTAAAAGTATATAATGCTGCAGTTGCTGCTACTGCTGATGGTCAGCCCTCTATTAAAGAGGGTGATGAAAAGAACAAGATGCATACCCACTCGTACTGTTGCTTGGATTATGCACAGATATATGATGTTGTAAGGTATCGATTACATCGGATGAAAAAAAAGTTAAAGGATGAATTGGACAGTAGAAATACCATTCAACAGTATATATGTCCCAATTGTGGGAGAAGATATTCAGCTTTTGATGCACTGCAACTTGTAAGCATGACTGATGAGTATTTTCACTGTGAAAGCTGTAATGCTGAACTTATTGCTGAGAGTGATAAGCTTGCTGCTGACGAAATGGGAGATGGAGATGATAATGCAAGGAGGCGACGAAGGGAAAAGTTAAAAGATATGCTCCAAAAGATGGAGGAGCAACTGAAACCCTTGATGCTGCAGCTTGCAAGAGTAAAGGATTTAGCTGTTCCTGAATTTGGCGGCCTCTTAGCTTGGGAAGCCAGAGCAAATGCAGCTGCACGTGCCGCGGGTGATTCTAATGCCAACGACTCCTCCAAATCTTCTCAGGGTCAAGGATATGGTGGAACACCTATGCCTTTTCTTGGTGAAACAAGGGTTGAGGTCGCACTCCCTGGTGTGGATGTAAAAGAAGAAGGCACAGAACCTGATACAAAATCTACAAGCCTGAAAGTTCTGCCCCCGTGGATGATTAAGCAAGGAATGGTTCTGACAAAAGAACAAAGAGGGGAAGTTAAACATGAGATAAAATCAGATCAGAGTTCTTACACCATAGATGAGAAGAAGCCAGATGTTGAGAAAGAAGATGAAAAGAAATTACAGGATGAATATCTCAAGGCTTACTATGCTGCTCTTGCGAAGAGGCAGGAAGAACATGAAGCATCATCTAAAAGCAATGAACAAGCTGAGAAAGATAAGGCCTCTACTTCTGATTATTCCAATGGAAATTTTGGAGCACCTTATTATCGACAGATTGGTGTGAAATCAAAACGTGTTGAGGATGAAAATGATGATGTTGACTGGGAAGAGGCTACTCCTAGAGGCAAAAGTGGGGAAACTTTCAAGCTCGCTGATCTGAATGCGCAGCCAGAAGAAGCATCTGATGACGAGGATGGTATAGATTGGGAGGAGGGCTGATTTCAGCAACAGCTGCCTGACTGCGCTGAAATTCAAATATATTGGCCAGAGAACATAACAAAAACAAAGGCTAGAAGAGTTTAATGTTGCTCCACAAATTCATTTTATCGACGACTTCACAAACTAAGTAAGGCGCAAAATTCAGTACCTCCTCAGAATGAAGCAAACGGTGCTGCGCACGCGCCTCTATCCATTTTTTGAGCTCGCGATGTAAAAAGCTTTCGGGATGGCTTGAAAACCAAGTGTGGCGTCTATGTCTGTGAACAGAAACCTATTCATTCATGTATTCTTCTTAGAAAAATGCTATTTCGCTCCCAAATAGCTTCCAAAATAATGTACTAGGATTTTATTTAAAATTCGCAATTTTAGCGGGCTTACTCGCAAAAGCTCATTGAATCCTGATTTTTAATGACTTTTTAAAGGAGGCCAAAAACAATTTTTTTTAATTTTTAATTCAGCTGAAACTCTTTGTAATAGCAAGTTCTTATGTGGCTTTGAAGTACACAATGTGATTTGGCATAGTTATTGATTGACAGTAAGTGAGCTTCCTTCATATAAAGTAGTCGATGCTAAGAATTTAC

Network for GWHGAAEX009241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02002.16	TFIIE_alpha	41	155	2.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03136	TFIIE1, GTF2E1, TFA1, tfe	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	Biological Process	transcription initiation from RNA polymerase II promoter

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.250
SRP064423	SRR2545915	Juvenile tuber	28.130
SRP108465	SRR5643513	five period of Gastrodia elata	23.060
	SRR5643514	five period of Gastrodia elata	23.100
	SRR5643515	five period of Gastrodia elata	19.580
	SRR5643524	five period of Gastrodia elata	24.270
	SRR5643525	five period of Gastrodia elata	27.080
	SRR5643528	five period of Gastrodia elata	23.700
	SRR5643658	five period of Gastrodia elata	30.220
	SRR5643659	five period of Gastrodia elata	24.940
	SRR5643660	five period of Gastrodia elata	22.720
	SRR5643661	five period of Gastrodia elata	22.650
	SRR5643662	five period of Gastrodia elata	21.850
	SRR5643663	five period of Gastrodia elata	21.830
	SRR5643664	five period of Gastrodia elata	23.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.810
SRP279888	Gastro	Gastrodia elata tuber	23.37
	Juven	Juvenile tuber	25.95
	Mother_Gastro	Mother tuber of Gastrodia elata	17.33
	Mother_Juven	Mother tuber of Juvenile	16.94