Detail information of GWHGAAEX009243/evm.TU.scaffold_24.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262193501|ref|YP_003264710.1| | 1.00E-66 | SNF2-like protein [Haliangium ochraceum DSM 14365] |
| KOG | KOG0383 | 0 | Predicted helicase |
| nr | gi|743882519|ref|XP_010909175.1| | 0 | PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 0 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|M5WLB6|M5WLB6_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ14484.1} |
| TAIR | AT5G44800 | 0 | chromatin remodeling 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000021 | 6892576 | 6937165 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009243
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00385.23 | Chromo | 481 | 529 | 2.20E-08 |
| PF00176.22 | SNF2_N | 581 | 859 | 3.80E-58 |
| PF00271.30 | Helicase_C | 882 | 996 | 4.40E-17 |
| PF06465.12 | DUF1087 | 1181 | 1219 | 3.60E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.330 |
| SRR2545915 | Juvenile tuber | 20.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.160 |
| SRR5643514 | five period of Gastrodia elata | 14.690 | |
| SRR5643515 | five period of Gastrodia elata | 14.490 | |
| SRR5643524 | five period of Gastrodia elata | 15.640 | |
| SRR5643525 | five period of Gastrodia elata | 18.760 | |
| SRR5643528 | five period of Gastrodia elata | 23.040 | |
| SRR5643658 | five period of Gastrodia elata | 23.320 | |
| SRR5643659 | five period of Gastrodia elata | 11.480 | |
| SRR5643660 | five period of Gastrodia elata | 12.990 | |
| SRR5643661 | five period of Gastrodia elata | 9.620 | |
| SRR5643662 | five period of Gastrodia elata | 11.480 | |
| SRR5643663 | five period of Gastrodia elata | 12.300 | |
| SRR5643664 | five period of Gastrodia elata | 12.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.70 |
| Juven | Juvenile tuber | 19.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.53 | |
| Mother_Juven | Mother tuber of Juvenile | 43.61 |