Gene detail

Detail information of GWHGAAEX009246/evm.TU.scaffold_24.125

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|260061439\|ref\|YP_003194519.1\|	1.00E-37	DNA polymerase IV [Robiginitalea biformata HTCC2501]
KOG	KOG2095	0	DNA polymerase iota/DNA damage inducible protein
nr	gi\|743882271\|ref\|XP_010909115.1\|	0	PREDICTED: DNA polymerase eta isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8H2D5\|POLH_ARATH	0	DNA polymerase eta
trEMBL	tr\|K3XFI2\|K3XFI2_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si000651m}
TAIR	AT5G44740	0	Y-family DNA polymerase H

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000021	7168941	7200995	-

Transcript Sequence
>GWHTAAEX009246 GTTGGCAAAACCCTTTTTAGTACAAGCGGTGGACGGAGCCAAGGAAACACGAGCGCGGCAAAAGCAGATGCCAGTTCCTCGGCCAGATCCACAAGGAGATCGCGTTATCGCCCACATAGACATGGATTGCTTCTATGTCCAAGTGGAGCAGAGAAAACAGCCCAAACTTAGGGGCCTGCCCACAGCTGTAGTACAGTATAATGATTGGAAAGGTGGGGCTTTAATTGCGGTAAGCTATGAGGCTCGAAAATTTGGTGTGAAACGTTCCATGCGAGGAGATGAGGCTGAAATTGTTTGCCCAAGTATACAGTTGGTTCAAGTTCCTGTTGCTCGTGGAAAAGCCGATTTGAATACATATCGGAGTGCTGGTTCCGAGGTAGTCTCTATATTGTCAACAAAAGGAAGGTGTGAGCGTGCGTCCATTGATGAAGTTTACCTTGACCTGACTGATACTGCTGATGCTATGCTGTCTGAAACCCCAGATATACTCAAAGACCTCGATAAAGAAGTTTTGAAATCGTATGTTCTGGGCCTGGGTGATGATGAGGACCAGGAAAAGCATGGGTGGTTTTATCGACATGATGCCACCTATCAAGATAAATTATTAGCTTGTGGAGCCATTGTAGTTGCACAATTGCGCAGCCTAGTTCTGAAAGAAACAGAGTTCACCTGTTCTGCTGGAATTGCCCACAACAAGATGTTGGCAAAACTTGCTAGTGGAATGCACAAACCAGCACAACAAACAATTGTACCTTCATCAGCAGTACAAGGCCTGCTCGCATCCTTGCCTGTGAAGAAAATGAAACAACTTGGAGGAAAACTTGGAAGCTCATTACAAGATGATCTTGGGATTAACACTGTTGGTGATTTACTGAAGTTTTCTGAAGAGAAGCTTAAAGAACTATACGGTTTTAATACAGGGTCTTGGTTATGGAATATTGCTCGAGGTATTAGTGGGGATGAAGTCAAGGGCCGTGTTCTTCCTAAGAGCCATGGCTGTGGAAAGACATTCCCAGGACCAAGAGCATTGAAAACTAATTCTGCTGTTGAGGACTGGCTTAATCAATTATGTGAAGAACTGAGCGAACGTATTCAATTTGACTTGGATCAGAATAAGAGGGTTGCACAAACTCTAACCTTGCATGCAACAGCATTTACGATAAATGACATGAGATCATACAAGAAATTTCCTTCAAAGTCATGCCCGTTGCGCTATGGCATAAATAAAGTTCAAGAAGATGCAAAAAAGCTTTTTGATACTGGTCTTCGTGAATTTTTGGGATCTCATAGCATTTCATGGAGGGTAACCTCACTCTCTATAACTGCTAGTAAAATGTTGGATTCTCCTGGAACATCTTCAATATTGAGATTTTTTCAAGAGAACAGCTTTTCTACTACCACGTCTGATGCGTCTTATGATGATATCCAAGATGATGCTCCCTCATCCTCCATTGGATGCAAAGGACACATGCTACCGTCGGAATGTTCCGAGGATCAAGGAGTGTTTGCTGATGGAAAATCTGTCAAAGTAGACGAAGTACCTAATCAACTTGGAAATGATGATTTTTTCATGCATAATAAAAAGCATAAAGACAAGGGAAAAGATTCCATTTTAAAGTTCTTTTCTGGTATCAGTACCTCTTCAAAACAAGCATCAGATAGTCAGGATCAAAGAGGCGGCCAGCGGGAAGAATGTGCGGCTAGGGAACACGGCAGGAATGGTGGGGCTTTAAGTCAACGATGGGATGGCTCATGGAATTTCAATGCCGAGGATATTGATCCTTCTGTCATTGATGAGTTGCCTCCAGAAATTCAGCAGGAAGTGCGGGGCTGGATTCGTTCTTCTAAGCGCACAAAGACAACAGAAAAACGAGGATCCAGTATTTTGCATTATTTTCCCACAGATAACGCTTAGGGGCGATATTTTCATGCCAAGATAGTTGTTTAAATTGTAAATAGAATTCTTAGTTTGGTGTACTGTATTAGAACACGGTTCGATACTGACATCTGCCCACTAGTGCTACTATAATCTTTATCCATGTATAAGTATGATATAATAAAATATAAATTTTATCTGGTGTGTACATCAAAATTTTCTGTTGGA

Network for GWHGAAEX009246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00817.19	IMS	39	239	3.90E-47
PF11799.7	IMS_C	322	452	1.80E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03509	POLH	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006281	Biological Process	DNA repair
GO:0003684	Molecular Function	damaged DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.310
SRP064423	SRR2545915	Juvenile tuber	31.390
SRP108465	SRR5643513	five period of Gastrodia elata	29.140
	SRR5643514	five period of Gastrodia elata	22.600
	SRR5643515	five period of Gastrodia elata	53.750
	SRR5643524	five period of Gastrodia elata	38.370
	SRR5643525	five period of Gastrodia elata	31.780
	SRR5643528	five period of Gastrodia elata	102.320
	SRR5643658	five period of Gastrodia elata	20.820
	SRR5643659	five period of Gastrodia elata	32.670
	SRR5643660	five period of Gastrodia elata	30.090
	SRR5643661	five period of Gastrodia elata	52.350
	SRR5643662	five period of Gastrodia elata	30.050
	SRR5643663	five period of Gastrodia elata	28.880
	SRR5643664	five period of Gastrodia elata	24.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.410
SRP279888	Gastro	Gastrodia elata tuber	34.72
	Juven	Juvenile tuber	36.30
	Mother_Gastro	Mother tuber of Gastrodia elata	39.80
	Mother_Juven	Mother tuber of Juvenile	55.33