Detail information of GWHGAAEX009246/evm.TU.scaffold_24.125


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|260061439|ref|YP_003194519.1|1.00E-37DNA polymerase IV [Robiginitalea biformata HTCC2501]
KOGKOG20950DNA polymerase iota/DNA damage inducible protein
nrgi|743882271|ref|XP_010909115.1|0PREDICTED: DNA polymerase eta isoform X1 [Elaeis guineensis]
Swissprottr|Q8H2D5|POLH_ARATH0DNA polymerase eta
trEMBLtr|K3XFI2|K3XFI2_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000651m}
TAIRAT5G447400Y-family DNA polymerase H

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002171689417200995-
Transcript Sequence

Network for GWHGAAEX009246

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00817.19IMS392393.90E-47
PF11799.7IMS_C3224521.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03509POLH Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0003684Molecular Functiondamaged DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.310
SRR2545915Juvenile tuber31.390
SRP108465SRR5643513five period of Gastrodia elata29.140
SRR5643514five period of Gastrodia elata22.600
SRR5643515five period of Gastrodia elata53.750
SRR5643524five period of Gastrodia elata38.370
SRR5643525five period of Gastrodia elata31.780
SRR5643528five period of Gastrodia elata102.320
SRR5643658five period of Gastrodia elata20.820
SRR5643659five period of Gastrodia elata32.670
SRR5643660five period of Gastrodia elata30.090
SRR5643661five period of Gastrodia elata52.350
SRR5643662five period of Gastrodia elata30.050
SRR5643663five period of Gastrodia elata28.880
SRR5643664five period of Gastrodia elata24.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.440
SRR6049655Rhizomagastrodiae_C368-T10_good_120.780
SRR6049656Rhizomagastrodiae_C368-T07_good_121.450
SRR6049657Rhizomagastrodiae_C368-T07_good_120.020
SRR6049658Rhizomagastrodiae_C368-T04_good_120.100
SRR6049659Rhizomagastrodiae_C368-T04_good_123.060
SRR6049660Rhizomagastrodiae_C368-T01_good_121.640
SRR6049661Rhizomagastrodiae_C368-T04_good_119.660
SRR6049662Rhizomagastrodiae_C368-T01_good_120.980
SRR6049663Rhizomagastrodiae_C368-T01_good_121.880
SRR6049664Rhizomagastrodiae_C368-T10_good_118.410
SRR6049665Rhizomagastrodiae_C368-T10_good_118.410
SRP279888GastroGastrodia elata tuber 34.72
JuvenJuvenile tuber36.30
Mother_GastroMother tuber of Gastrodia elata 39.80
Mother_JuvenMother tuber of Juvenile 55.33