Gene detail

Detail information of GWHGAAEX009251/evm.TU.scaffold_240.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|397781445\|ref\|YP_006545918.1\|	3.00E-06	RNA recognition motif-containing protein [Methanoculleus bourgensis MS2]
nr	gi\|728831437\|gb\|KHG10880.1\|	0	Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
Swissprot	tr\|Q9LRR6\|CID9_ARATH	5.00E-08	Polyadenylate-binding protein-interacting protein 9
trEMBL	tr\|A0A061ELF4\|A0A061ELF4_THECC	0	RNA recognition motif-containing protein isoform 1 {ECO:0000313\|EMBL:EOY05172.1}
TAIR	AT3G23900	0	RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000244	253673	281078	-

Transcript Sequence
>GWHTAAEX009251 CAATAATAAATAAAACGCATGATTACTCTCGATATTTTTTGATTCCTGCACTTCGGATCTGCCTCCGGCTTTCCGCTTTACCCTCTCTTGTTCCATCGAATCCTCCCGTCATTGCATAACTTCAGGGGTAGCAGCGAAGCGATCGAAGAAACAAAACCGTGCTCTTCTACCGCGATCTGAGATCATGATGGATCGGTCTGTAGCTGTGCCAAAGCCTATATGGATGAAGCAGGCTGAAGAAGCAAGAATAAAGAGCGAAGCTGATAAGGATGCTGCTGCAAAAGCCGCATTCGAGGCAACTTTTAAGGACGTCGACAAGACAAAATCTATGAACGATTCTTCTGGCAGCGAAGATAATGCGAGGGATGATGAAGACATGTCCTCCAAGCCCATTGGACCTGTTGATTCTTCTAAATGTTTCGCAGCCGGTGCAGGCATTGCTGGTGGAACTGCTAGTTCTCCCACCACATTCAGCATTCTTACCAAAGACTCAGATGGACGGAAGATCCTCACAGGTGGTGCCCAAATCAAGGTTAAAATTTCACCTGGTGTTGGAGTTGGTGGAGTTGACCTGGAGGGCATGATCAAGGACCAGGGGGACGGCACCTACACAGTAACCTATGCTGTGCCCAAGCGTGGAAATTACATGGTTCATGTGGAGTGCAATGGCATACCGATCATGGGAAGCCCTTTTCCTGTGTTCTTCAGTACCGGCCCTGCCATAGGTGCTGCTACCTTGCCCATCATTGCTGCATCTTACTCTAATATGGTTAATCAAACAATGCCTAACATGCCAAATTACTCTGGCTCTGTTTCTGGAGCTTTTCCTGGACTCCTCGGTATGATTCCTGGGCTCTCCTCTGGTTCTTCAGGAGGAGTGGTGCTGCAGGGGTTGGGATCATCTCTGGGAGAGATTTGCAGGGAGTATTTGAATGGGCGGTGTGCAAATAGTGTATGCAAGTATAGCCATCCTCCTCATAATTTGTTGATGTCAGCACTGGCAGCCACAACAACTATGGGAACCTTGAGTCAGCAGCCCATGGCTCCTTCTGCTGCTGCTATGGCTGCTGCCCAAGCAATAGTGGCAGCTCAAGCACTTCAGGCACATGCGGCTCAGATGCAAGCACAGACGAAATCTACAGGAGAATCATCTGATTCTATGGACAATGCTGCAAAGGTAGATACTATGAAAAGAACACTGCAAGTTAGTAACTTAAGCCCTCTTCTTACTGTTGACCAGCTTAAACAGCTTTTTGGTTACTGTGGTACTGTGGTGGACTGCACGATTACAGATTCAAAGCATTTTGCTTACATAGAGTATTCAAAGCCAGAAGAAGCCACTGCAGCTTTAGCATTGAACAACATGGATGTTGGGGGACGGCCATTAAATGTTGAGATAGCCAAATCCCTTCCTTCTAAACCCTCATTAGCGAACTCTTCTTTGCCTTTGATGATGCAACAAGCTGTTGCTATGCAGCAGATGCAATTTCAGCAGGCTTTGCTGATGCAGCAGACAATGTCAGCCCAACAGGCTGCTTCCCGAGCTGCAACAATGAAATCTGCTACTGAAATGGCATCTGCCCGTGCTGCTGAAATCAGCAAAAAGTTAAAAGCTGAAGGCTTGATAGAAGATGATAAAGAAGCCATTAAAAATTCCAGATCACCTTCTCAACATAGGTCTAAATCTCGATCACGATCCCCTATCAAATATCGCCGAAGTAGAAGATCCGGCTCTATTTCTCCTGTTAGATTCGCTAGAAGTGGCAGATCCCCATCCCCTAGGAGATCTCGTCGATCCCCATCCCCTAGGAGATCTCGCCGATCCCCATCCCCTAGGAGATCTCGCCGATCCCCATCCCCTAGGAGATCTCGCCGATCCCCATCCCCTAGGAGATCTCGCCGATCAGTATCCCCCAGGAGATCTCGCAAATCAGCATCTCCCAGGAGATCTCGCAGATCACCTTCCCCACAAAGGTCTCGTAGATCACCACCAATGAAGAGATCACACAGATCACCATCCCCCCTAAGAACTCACCATCATAATAGCGAAAGCTTTCAGTACAAAGATCCTAGGAATAGCTACAGTAGAGGTGGAAAGAAGGAAAGCGGTAGCTCACGTGATCACTATTCATCTTCTTCAAGGAGACACAGGAGCAGGACCTCAAGTCCTCAATTAAAAAAGTCATCTCGTGCAAGTTCCAGATCCCCACTTCGCAACAGAGGAAGTAAAAGCCCCAAAACTAAGAAATCATCTCAATCTGGCTCAATGTCTCCTAAGCATCATAGAGGAAGCAGACCATCTCCAGCTCGTGATAATGGAATTTCATTAAGCCATGTCAGGCACTCAAGATCTAGATCTGCTGAGAAAAGGAACTATTTCCGTGAAAAAGAAGAAGCCCAAAACATAGAAAAGCTAGAGCAGGAACACAAGAATAACGATAGAAACAACGTAACAGATGAAATCAATGCCACTGGTGCTAAAATTACTTGGGAGTTTGAAGAGGAAGAGAATTTGAATCTTAAAAGGAGTTCCATAGCTGATGATGTGTGTGCTAAGAATGATGAAGGAACTGACCATTATAAAAATATTAAGTTGGACGAAAGATATTCATTAACATCAGAGTCTCTGACTAATGATCTAATCCTTGTTGGGGAAGAGAGCGGCGTGATAGAAGACAAGAAGTTTATTGGTTCAGAAGTTTCAATGTCATCTCAAAGGCTAATTTCAGAAGATGGCAATAATATTTACTCTGAAAAACGTGACTATAAAAGGAGGGAGGATGTGCACGCCAAGAATGATGAAGAAACTGACCATTCTAAAAAATCTAAGTTGGACGAGAAATATTCTTTACCATCAGAGCCCCTAACAGATGATCTAGACCCTGCTAGGGAAGAGAGGAGAAAGATAGAAGACAGGAAGTTTGTTAGCTCAGAAGTTTCGAAGCCATCTCGAAGGGTAATTTCTGAAGATGGCTATGATATTTACTCTGAAAACCATGAACGTAAAAGGACTTCGAATCACAGTACTTCTAGCCGTCATGTTGAAAGTAGAGAATCGAGCAAGTATGAAAAGCATGGCAGAAGCCATAAAAAATATGAAAAACTGAGCTTTGAGGAGAGAGAATCTTCACATAGTAGGGATGATAGAAGATCTTCTCATTATTCGAACTCAAGGTCACATAGAAGTTCTAGGCATTTGGAAGAAAGATCTACCAAGTATGCCAGTGATCATCAGAGGACTGAAAGTTTGGAAGCTGAGCATAGGAAACATCATAGCAGCAGAAGTGAAGCTAATAAGTCTTCGTCTTTAACTAAGTTGAAGGATAGGGACTTGCATTCCACAAAGAAAAATCTTAATGGTTCCAAGTCTCCCTCAACCAAGAATGGAACACAACAGCGTGTGCAAGTGCTTGATAGGCATGAACATTTAGACAAAATTATTTCACCTGCTTGCAAGCCAGTTGCTGTGGTTAACAGTATCTTAGACTTGGGAGAAGTCTGTCAATCTGTTGGGGCTGAAATTGATCATACTGAATGTGAAGAGTTGAGACTGGATTTGCCCCCTACAGAAAATTACGGCCATGAAGAATTTCACAACTATGTTGACAAAAACTCTCACAGCCAGAAATCAGAAATGAATCTGTTAAGCAATCAGGAAGGCCATTTTAATCAAGACTCAGTTTGCCTGGAAAGTGATAGGAAAATTGAAGGAACTGATACAATCAGCGAGTCTGTCAAATATACGACTGCTGTATCTGGTGAAACTGATGTTCTTATTTTAAAAGAGGATGATACAATCCAAAAACGAAGCACGGAAGCTGCACTTGATCAAGAACGTATATATCAGGAACCTCTGAAATATGAAGATAATCTGATAGAAGGAGCTGATATGATTCTGGAGGAGCAGGGTTATTGAAATTGTGATACCAAATTCTAGCAAATAAAAAATTTATAGTGCAGCTGATATATTACCGCTTTTGATATTGATCTTTCAATTCCATTTGCAAGCTTGAAAGCAGAAACAACTAAATGCTATGCTATCACAGAGATTAGTACACAATTAATTTGGGTGATAGAGCTGCTAGTTAGTTTTCTTCTGATCCACAATTTTATTTGCAGGAACTGATGCTCCAGGTCTTGCAGGAAAGGGTTCTTTCTGACATTATGGAAATGAAACTTCCCCAAACTTCAATTTCTTAAAAGTTGTTCTGGGACCGCATGCCAGGTGCTCCTCAAGTGATTGTGGCTCATGAGGCATTTCTTTCTTTTTATGAGGAATCATCGTTCAAAAGTCGAGTTATGGCAAGTGTTTTGTCGTCATTGAAATACGTTGAGGGAGGGAAACCCGATGACATCTTCATTCAGTAAAAGGGTTGTTATCCTGGATTAGTGTACTGTCATCAGATATGTTTTATTTTGAACTCCTTTACTTATATAGAATTTAGTTTATTATGTATATATATATATATATATTA

Network for GWHGAAEX009251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00630.18	Filamin	73	170	1.50E-18
PF00076.21	RRM_1	341	401	3.20E-12

Protein Sequence

>GWHPAAEX009251
MMDRSVAVPKPIWMKQAEEARIKSEADKDAAAKAAFEATFKDVDKTKSMNDSSGSEDNARDDEDMSSKPIGPVDSSKCFAAGAGIAGGTASSPTTFSILTKDSDGRKILTGGAQIKVKISPGVGVGGVDLEGMIKDQGDGTYTVTYAVPKRGNYMVHVECNGIPIMGSPFPVFFSTGPAIGAATLPIIAASYSNMVNQTMPNMPNYSGSVSGAFPGLLGMIPGLSSGSSGGVVLQGLGSSLGEICREYLNGRCANSVCKYSHPPHNLLMSALAATTTMGTLSQQPMAPSAAAMAAAQAIVAAQALQAHAAQMQAQTKSTGESSDSMDNAAKVDTMKRTLQVSNLSPLLTVDQLKQLFGYCGTVVDCTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEIAKSLPSKPSLANSSLPLMMQQAVAMQQMQFQQALLMQQTMSAQQAASRAATMKSATEMASARAAEISKKLKAEGLIEDDKEAIKNSRSPSQHRSKSRSRSPIKYRRSRRSGSISPVRFARSGRSPSPRRSRRSPSPRRSRRSPSPRRSRRSPSPRRSRRSPSPRRSRRSVSPRRSRKSASPRRSRRSPSPQRSRRSPPMKRSHRSPSPLRTHHHNSESFQYKDPRNSYSRGGKKESGSSRDHYSSSSRRHRSRTSSPQLKKSSRASSRSPLRNRGSKSPKTKKSSQSGSMSPKHHRGSRPSPARDNGISLSHVRHSRSRSAEKRNYFREKEEAQNIEKLEQEHKNNDRNNVTDEINATGAKITWEFEEEENLNLKRSSIADDVCAKNDEGTDHYKNIKLDERYSLTSESLTNDLILVGEESGVIEDKKFIGSEVSMSSQRLISEDGNNIYSEKRDYKRREDVHAKNDEETDHSKKSKLDEKYSLPSEPLTDDLDPAREERRKIEDRKFVSSEVSKPSRRVISEDGYDIYSENHERKRTSNHSTSSRHVESRESSKYEKHGRSHKKYEKLSFEERESSHSRDDRRSSHYSNSRSHRSSRHLEERSTKYASDHQRTESLEAEHRKHHSSRSEANKSSSLTKLKDRDLHSTKKNLNGSKSPSTKNGTQQRVQVLDRHEHLDKIISPACKPVAVVNSILDLGEVCQSVGAEIDHTECEELRLDLPPTENYGHEEFHNYVDKNSHSQKSEMNLLSNQEGHFNQDSVCLESDRKIEGTDTISESVKYTTAVSGETDVLILKEDDTIQKRSTEAALDQERIYQEPLKYEDNLIEGADMILEEQGY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0005515	Molecular Function	protein binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.870
SRP064423	SRR2545915	Juvenile tuber	57.300
SRP108465	SRR5643513	five period of Gastrodia elata	47.090
	SRR5643514	five period of Gastrodia elata	46.920
	SRR5643515	five period of Gastrodia elata	45.500
	SRR5643524	five period of Gastrodia elata	45.550
	SRR5643525	five period of Gastrodia elata	57.710
	SRR5643528	five period of Gastrodia elata	35.850
	SRR5643658	five period of Gastrodia elata	58.840
	SRR5643659	five period of Gastrodia elata	73.000
	SRR5643660	five period of Gastrodia elata	83.140
	SRR5643661	five period of Gastrodia elata	62.790
	SRR5643662	five period of Gastrodia elata	57.330
	SRR5643663	five period of Gastrodia elata	77.630
	SRR5643664	five period of Gastrodia elata	69.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	82.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	80.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	94.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	72.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	78.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.970
SRP279888	Gastro	Gastrodia elata tuber	78.28
	Juven	Juvenile tuber	91.57
	Mother_Gastro	Mother tuber of Gastrodia elata	46.35
	Mother_Juven	Mother tuber of Juvenile	71.22