Detail information of GWHGAAEX009254/evm.TU.scaffold_240.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01161.00E-89RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
nrgi|743765716|ref|XP_010913086.1|2.49E-154PREDICTED: ras GTPase-activating protein-binding protein 1 [Elaeis guineensis]
Swissprottr|Q1PDV2|SRC28_ARATH1.00E-06Serine/arginine-rich SC35-like splicing factor SCL28
trEMBLtr|B9T3B3|B9T3B3_RICCO2.00E-137RNA binding protein, putative {ECO:0000313|EMBL:EEF29634.1}
TAIRAT3G251501.00E-89Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000244544683581894-
Transcript Sequence

Network for GWHGAAEX009254

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02136.19NTF2181342.90E-29
PF00076.21RRM_13293871.90E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms345.100
SRR2545915Juvenile tuber193.960
SRP108465SRR5643513five period of Gastrodia elata149.650
SRR5643514five period of Gastrodia elata103.710
SRR5643515five period of Gastrodia elata122.180
SRR5643524five period of Gastrodia elata106.640
SRR5643525five period of Gastrodia elata171.800
SRR5643528five period of Gastrodia elata179.880
SRR5643658five period of Gastrodia elata180.270
SRR5643659five period of Gastrodia elata184.740
SRR5643660five period of Gastrodia elata222.000
SRR5643661five period of Gastrodia elata212.710
SRR5643662five period of Gastrodia elata209.050
SRR5643663five period of Gastrodia elata189.190
SRR5643664five period of Gastrodia elata229.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1201.650
SRR6049655Rhizomagastrodiae_C368-T10_good_1191.680
SRR6049656Rhizomagastrodiae_C368-T07_good_1184.580
SRR6049657Rhizomagastrodiae_C368-T07_good_1256.430
SRR6049658Rhizomagastrodiae_C368-T04_good_1302.820
SRR6049659Rhizomagastrodiae_C368-T04_good_1336.780
SRR6049660Rhizomagastrodiae_C368-T01_good_1245.320
SRR6049661Rhizomagastrodiae_C368-T04_good_1276.740
SRR6049662Rhizomagastrodiae_C368-T01_good_1141.690
SRR6049663Rhizomagastrodiae_C368-T01_good_1183.870
SRR6049664Rhizomagastrodiae_C368-T10_good_1135.150
SRR6049665Rhizomagastrodiae_C368-T10_good_1135.150
SRP279888GastroGastrodia elata tuber 232.67
JuvenJuvenile tuber227.52
Mother_GastroMother tuber of Gastrodia elata 112.03
Mother_JuvenMother tuber of Juvenile 186.14