Gene detail

Detail information of GWHGAAEX009256/evm.TU.scaffold_240.10

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2970	9.00E-155	Predicted membrane protein
nr	gi\|743770947\|ref\|XP_010915760.1\|	0	PREDICTED: post-GPI attachment to proteins factor 3-like [Elaeis guineensis]
trEMBL	tr\|M0RRK0\|M0RRK0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P12200_001}
TAIR	AT1G16560	9.00E-155	Per1-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000244	661037	695485	+

Transcript Sequence
>GWHTAAEX009256 AAAAATATTAGAAGAGTTGCACTTCTAAAGATCCAAACGCAAAAACGGTTCATCATCTTCGATAAGCGCAGATCTTGATAGTTTCGGGGAAAATATTTATGCAAAAAAAAAGATTCTTCTGAACTTCTCGTGTCTGCTGCGAAGCGTGCGACCGATCGGATTGCTTCCTATTTTCCAGTCGGAGCTTCTCGATCCATATCCATAAAGTCCCATTGGATCGTTTTTTTTTAATTTCTTTATCATCATCTTGATCGATGTCGAGTGAACAATGGTTCTCTCTCTTTCTTCTGCTCGGATTTCTCGTCGGAGGCATCTATGCCAGCGCTGGCGACGCTGATCCGGCTTATAGGTTTTGTACTGAACAATGTGAGAAGACAGGGAAAGTAGGAGACATTTCTATCACACACTGCTTGTTTTCTTCTCATGATTTGGATGCTAATAACACATGGTACATGCAAGAGCCTCTTTACTTGCAGTGGAAACAGTTAAACTGCAGAAGCGACTGCTCCTATAATTGTATGATGCTAAGGGAGAGAGAGAGGGAGGCAGCTGGTTTCAGCCCAGTCAAATATCATGGAAAATGGCCTTTCAAGCGTATTCACGTTTTTCAGGAACCTGCTTCAGCTGCATTATCTGCGCTCAATCTAGTGATGCATTTTGTTGGATGGCTCTCATTTTTTATCTTGGTAAATTACAAACTTCCTCTTAGAACTAACAGTAAGAGAACGTACTATGAATACACTGGATTGTGGCATATTTTTGGCCTCCTGTCAATGAATGCGTGGTTTTGGAGCACTATATTCCATTCAAGGGACTTTGATATGACAGAGAAGCTGGATTACTCTTCCGCCGTGGCTTTACTTGGGTATTCGCTGATCCTTTCGTTGCTGCGGACATTTGATGTGAAGGACGAGGCAACAAGAGTTATGTTTGCGGCACCTATTTTGGCATTTGTAACAACGCACATATTGTATCTTAACTTCTACACACTTGATTATGGGTGGAACATGAAAGTGTGCCTTGTTATGGGGATGGTCCAACTCCTCGCGTGGGCGATATGGGCTGGAATGAATGGTCATCCTCATCGGTTCAAGCTGTGGACGGTCACGATCGGAGGTGCCCTCTCCACACTCTTAGAAATATACGACTTTGCCCCCTATAATGGGTATATCGATGCCCATGCCTTGTGGCATGCAACCACCATTCCCCTCACCTATCTTTGGTGGAGCTTTATCAAGTCTGATGCAGAGTACAGGACTGCATTGCTTGTCAAGAAGGTAAAGTAGCAGACAAATTTGGATGCTAAATCTGTTCACTTCCATTGTGCTACTTGCTAATTTCTTATTGATGGCTAGTGATGCTGCTTTTCTTACTTTTCCAGCATTGGATATGAAGAAGAAACTCTTTATTTATTTTTTGTTTTTTTTCTGACAGTGTTGTAGTCATATCTTGCTCTTCTTCATAATATCATAAAAATAGATGAAATAGAATTTTGGGTTTCACACAAACTTTCTTTTTCATATAATTTTGGTGTTGTAGTCTTAATCACAGCATTAATAAGGATCATTTTTATTAAAAATTTGAAATTGTACACATTCATATTTTGATGTTTAAATAAGTTTTT

Network for GWHGAAEX009256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04080.12	Per1	70	331	3.60E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006506	Biological Process	GPI anchor biosynthetic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	81.400
SRP064423	SRR2545915	Juvenile tuber	57.660
SRP108465	SRR5643513	five period of Gastrodia elata	51.750
	SRR5643514	five period of Gastrodia elata	47.870
	SRR5643515	five period of Gastrodia elata	53.330
	SRR5643524	five period of Gastrodia elata	55.360
	SRR5643525	five period of Gastrodia elata	72.070
	SRR5643528	five period of Gastrodia elata	76.870
	SRR5643658	five period of Gastrodia elata	70.280
	SRR5643659	five period of Gastrodia elata	44.340
	SRR5643660	five period of Gastrodia elata	43.370
	SRR5643661	five period of Gastrodia elata	43.270
	SRR5643662	five period of Gastrodia elata	49.910
	SRR5643663	five period of Gastrodia elata	45.090
	SRR5643664	five period of Gastrodia elata	44.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.710
SRP279888	Gastro	Gastrodia elata tuber	49.95
	Juven	Juvenile tuber	49.27
	Mother_Gastro	Mother tuber of Gastrodia elata	61.09
	Mother_Juven	Mother tuber of Juvenile	54.10