Detail information of GWHGAAEX009260/evm.TU.scaffold_241.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148244857|ref|YP_001219551.1| | 3.00E-09 | methionyl-tRNA formyltransferase [Candidatus Vesicomyosocius okutanii HA] |
| KOG | KOG3082 | 1.00E-36 | Methionyl-tRNA formyltransferase |
| nr | gi|514780418|ref|XP_004969591.1| | 7.06E-48 | PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like isoform X1 [Setaria italica] |
| trEMBL | tr|K3XJA8|K3XJA8_SETIT | 3.00E-48 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si001981m} |
| TAIR | AT1G66520 | 1.00E-36 | formyltransferase, putative |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000238 | 9478 | 10712 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009260
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02911.17 | Formyl_trans_C | 4 | 110 | 1.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00604 | MTFMT, fmt | One carbon pool by folate | map00670 |
| Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016742 | Molecular Function | hydroxymethyl-, formyl- and related transferase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.050 |
| SRR2545915 | Juvenile tuber | 7.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.400 |
| SRR5643514 | five period of Gastrodia elata | 13.360 | |
| SRR5643515 | five period of Gastrodia elata | 9.610 | |
| SRR5643524 | five period of Gastrodia elata | 10.200 | |
| SRR5643525 | five period of Gastrodia elata | 22.700 | |
| SRR5643528 | five period of Gastrodia elata | 18.280 | |
| SRR5643658 | five period of Gastrodia elata | 20.800 | |
| SRR5643659 | five period of Gastrodia elata | 9.420 | |
| SRR5643660 | five period of Gastrodia elata | 12.490 | |
| SRR5643661 | five period of Gastrodia elata | 11.510 | |
| SRR5643662 | five period of Gastrodia elata | 13.550 | |
| SRR5643663 | five period of Gastrodia elata | 12.980 | |
| SRR5643664 | five period of Gastrodia elata | 7.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.48 |
| Juven | Juvenile tuber | 18.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.81 | |
| Mother_Juven | Mother tuber of Juvenile | 12.75 |