Detail information of GWHGAAEX009261/evm.TU.scaffold_241.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-176 | FOG: PPR repeat |
| nr | gi|672168357|ref|XP_008804180.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Phoenix dactylifera] |
| Swissprot | tr|Q9SZK1|PP355_ARATH | 6.00E-177 | Pentatricopeptide repeat-containing protein At4g38010 |
| trEMBL | tr|F6HP80|F6HP80_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56486.1} |
| TAIR | AT4G38010 | 2.00E-176 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000238 | 13387 | 15580 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009261
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 146 | 172 | 0.018 |
| PF01535.19 | PPR | 174 | 199 | 0.00029 |
| PF13041.5 | PPR_2 | 269 | 317 | 6.60E-09 |
| PF01535.19 | PPR | 345 | 369 | 0.0091 |
| PF13041.5 | PPR_2 | 371 | 418 | 1.50E-09 |
| PF01535.19 | PPR | 445 | 470 | 0.013 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.080 |
| SRR2545915 | Juvenile tuber | 13.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.700 |
| SRR5643514 | five period of Gastrodia elata | 9.430 | |
| SRR5643515 | five period of Gastrodia elata | 10.960 | |
| SRR5643524 | five period of Gastrodia elata | 8.090 | |
| SRR5643525 | five period of Gastrodia elata | 4.010 | |
| SRR5643528 | five period of Gastrodia elata | 3.690 | |
| SRR5643658 | five period of Gastrodia elata | 2.530 | |
| SRR5643659 | five period of Gastrodia elata | 15.390 | |
| SRR5643660 | five period of Gastrodia elata | 16.160 | |
| SRR5643661 | five period of Gastrodia elata | 18.310 | |
| SRR5643662 | five period of Gastrodia elata | 14.950 | |
| SRR5643663 | five period of Gastrodia elata | 15.860 | |
| SRR5643664 | five period of Gastrodia elata | 15.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.13 |
| Juven | Juvenile tuber | 9.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.70 | |
| Mother_Juven | Mother tuber of Juvenile | 6.94 |