Detail information of GWHGAAEX009269/evm.TU.scaffold_241.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338175016|ref|YP_004651826.1| | 2.00E-84 | UDP-N-acetylenolpyruvoylglucosamine reductase [Parachlamydia acanthamoebae UV-7] |
| nr | gi|672173958|ref|XP_008807119.1| | 7.10E-129 | PREDICTED: uncharacterized protein LOC103719579 [Phoenix dactylifera] |
| trEMBL | tr|M0TGT5|M0TGT5_MUSAM | 4.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11970_001} |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000238 | 172650 | 181175 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009269
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 50 | 173 | 8.10E-19 |
| PF02873.15 | MurB_C | 214 | 312 | 2.10E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0008762 | Molecular Function | UDP-N-acetylmuramate dehydrogenase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.020 |
| SRR2545915 | Juvenile tuber | 2.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.180 |
| SRR5643514 | five period of Gastrodia elata | 5.050 | |
| SRR5643515 | five period of Gastrodia elata | 3.170 | |
| SRR5643524 | five period of Gastrodia elata | 4.540 | |
| SRR5643525 | five period of Gastrodia elata | 0.070 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 0.110 | |
| SRR5643659 | five period of Gastrodia elata | 4.890 | |
| SRR5643660 | five period of Gastrodia elata | 2.700 | |
| SRR5643661 | five period of Gastrodia elata | 5.740 | |
| SRR5643662 | five period of Gastrodia elata | 2.770 | |
| SRR5643663 | five period of Gastrodia elata | 1.960 | |
| SRR5643664 | five period of Gastrodia elata | 3.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.52 |
| Juven | Juvenile tuber | 1.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.87 | |
| Mother_Juven | Mother tuber of Juvenile | 1.09 |