Gene detail

Detail information of GWHGAAEX009272/evm.TU.scaffold_241.14

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1940	Zn-finger protein
nr	gi\|743874147\|ref\|XP_010906999.1\|	PREDICTED: uncharacterized protein LOC105033777 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0U1M9\|M0U1M9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P19220_001}
TAIR	AT3G18290	zinc finger protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000238	200873	251668	-

Transcript Sequence
>GWHTAAEX009272 ATGGAGGCGCCATTTGCGGGGGACGGAGTCGTGGCTCTCATGCCTCTGGAGCCTGCGAGCTCAATCGATCCTGCAGCTCCTTCCTCTTCCTCATCTTCATCCTTATCCATGGCGGCTTCTGAAGAGAGCAAATCGGCGGATAACTCCCCGTTGTTGATATTTGTCTTATTTCACAAGGCAATCAGGTCCGAGCTGGACCGGCTTCACCGTGCTGCGGTGTCGTTTGCGACGGATGGCGGTGGGGATGTTCACTTGTTATCGGATAGATGCCGTTTTCTATTCGATATCTACAAGCATCATTGCAATGCCGAGGATGCGGTTATTTTTCCAGCTCTTGACATCAGGGTGAAGAATGTAGCCAGGACATATTCTCTTGAACATGAAGGAGAAAGTGACCTCTTTGGTCAATTGCTTCACCTATTAGGCTCGGTCATTCAAGGTGATGATAGATTTTGGAGAGAATTTGCTTCTCGTACTGGAGCCGTTAAAACATCACTTAATCAGCACATGTCAAAGGAAGAGGAGCAGGTCTTTCCATTGCTCATTGAAAAGTTTTCATTTGAAGAGCAGGCTGATCTGGTATGGCATTTTTTCTGTAGCATCCCTGTGAATATGATGGCCGAATTTCTTCCTTGGCTGTCTTCTTGTGTTTCATCTGATGAGCATCAGGATATGATCAAATGCTTTTTGAGGATTGTTCCAGATGAAGAGCTTCTTCAAGAAGTGATATTCACCTGGTTGGAAGGGAAACACATGGAGATCATTGGTCAAAATCAAATATTTGAGTCGAACCTTGAGGAACATCTTGTATCTAGATCATGTAAATTGATTGACCAGTCAAATAAAAAGGTGTTTTCATTAGAAAGTTTAAGGCGTAGAAAGCGGAAGTTAGTAGATTTGAACTATGAGCCTGGGGATTTTATTGGTTCCCATCCAATAAATGAGATTTTGCATTGGCATAATGCAATCAAGAAAGAGTTAAATGATATCACAGAAGAGGCAAGTATGATACAACTTTCTGGAGATTTCCATAATCTTTCCAAGTTTGATGCAAGACTGCAATTTATTGCTGATGTTTGCATCTTTCATGGCATTGCCGAAGATCAGATTATTTTTCCGGCAGTTGATGGACAAGTCTCATTTGTAGTTGAGCATGCAGAAGAGGAAAACCAGTTTAATAAGTTTAGACTTCTAATTGAAAAAATAAAAAATGCTGGAACAAATTCAACCACTGCTGATTTTTATTCTAAGTTATGTTTATACGCTGATCAGATTATGGACGCAATTCAGAAGCACTTTCATAGTGAGGAAGTTGAGGTTCTTCCTCTTGCTAGGCGTCACTTTTCTACAAGAAAACAGCAAGAATTGCTGTACAGAAGTTTGTGTATAATGCCTCTGAGGCTATTGGAACGTGTTCTACCATGGTTGGTTTCCGAGCTTACTGATGAAGAGGCCAAGTCTTTTCTCCACAACACATGTTTTGCAGCACCGCCATCAGATTCTGCACTAGTAACTCTTTTCTATGGCTGGGCATGCAAGGGTCGGGCTGCAGATATATCTGATTCTTGCAAGTTTCAATGTTTATCTTCTGAGGCCATTGGTTGTTGCCTATTAGAGGATAAAATTGAGAGCGCTGCAGGTTCTGCTCTAGGAGCATGTACATGTGAATGCACTCCCAGTATCAAAGTTGATTCACGATCACAGATTGCAAACATGGAGAGTGGAAACAATATGCCAATAGCATACTCAAGTACTAGTGATGATGATCCATCAGGAAGAGAAGAGGTTCAAGGTTCATCATGTGTTACAACTTGTCGCATTCCTAGGTTAGGAGTTGATGATAGCAACAATTTAGGAATTAGTTCCATTGCCTCTGGTAAAGTTCTCCGTTCATTTTCATACAATTCTACGGCTCCTCTAAATTCTAGTCTCTTTCTTTGGGAAACAGACACATTATCATCCAGTATGGAGAATACTGTAAGACCAATTGATAACATTTTTAAATTCCACAAAGCAATCCAGAAAGACTTAGAGTATCTTGATGTTGAATCTAGTAAACTCATAAAATATAATGAGGTTTTTATGCGACAGTTCTGTGGAAGATTTCGTTTACTGTGGGGTTTATACAGAGCTCACAGCAATGCTGAAGATGAAATTGTTTTTCCTGCTTTAGAGTCAAGAGAGTCACTTCACAATGTTAGCCATTCATATACTCTTGACCACAAGCAGGAGGAGAAGCTGTTTAATGATATATCTGAAGCTCTTTCTGAGCTTTCACTATTACATGATGGTCTGACAAGGACAGATGCCAATATGGAACTATTAACTAGCACTAGTTGGAAAAGGAAGCACAATGAACTTGTTACAAGGCTTCAAGGCATGTGTAAATCAATACGAGTTACACTGGACCATCATGTTTTTAGAGAGGAACTTGAGTTGTGGCCTTTATTTGACAAACATTTTTCTATTGAGGAGCAGGATAAAATAGTTGGGCGCATAATTGGAACAACTGGAGCAGAGGTTTTACAATCAATGTTACCATGGGTTACATCGGCTCTAACACAAGAGGAACAGAACTTGATGATGGATATGTGGAGGCAGACAACTAGAAATACAATGTTTAATGAGTGGTTAAATGAGTGGTGGAAGGGTGCTCCAAGTTGTTCACCTGGTGAAACACAGCTTGGCAGTGTTCCAGAAGGAACTGATGTTCAAGAAAATTTAGACCAAAATGGTCAAATGTTCAAGCCTGGATGGAAGGATATTTTTAGAATGAATCAAAATGAGCTCGAAGCTGAAATACGGAAGGTCTCTAGGGATCCAACACTTGATCCACGAAGAAAAGCATATCTTATTCAAAATCTTATGACAAGCCGATGGATAGCAGCTCAACAAAAGTTGCCTCAGTCTAATGAAGACAATAAGGAGAAAGATTTTTTGGGGTTTTCTCCATCATTCCGAGATTCTGGGAAGAAAGTATATGGTTGTGAGCATTACAAAAGAAATTGCAAACTTGTTGCAGCTTGTTGTAACAAGTTATTCACATGCCGGTTCTGCCATGATAAAGTTAGTGATCATTCTATGGAAAGAAAAGCAACTTCAGAAATGATGTGCATGCGTTGCTTAAATATCCAGCCAATTGCAGCAACCTGCAGGACACCTTCATGCAATGAATTTTCCATGGCTAAGTACTACTGCACCATCTGTAAGTTCTTTGACGATGAAAGGATGGTGTATCACTGCCCCTTCTGTAATTTGTGCCGTGTTGGCGAAGGGCTCGGCATAGACTTCTTTCACTGCATGACGTGCAATTGCTGCCTTGGAATGAAATTAGTGGAGCACAAATGCAGAGAGAAAGGGCTCGAATCTAACTGCCCCATCTGCTGCGATTATCTCTTCACATCCAGCGCCGCAGTGAGAGCTCTTCCCTGCGGCCATTTTATGCACTCAGCATGCTTTCAGGCGTACACTTGCAGTCACTACACCTGTCCTATTTGCAGCAAATCCCTGGGAGATATGGCGGTCTATTTTGGCATGCTTGATGCTTTGCTTGCCACCGAGGAGCTCCCTAAGGAATACACTAACAAAATCCAGGACATACTGTGCAACGACTGCGACAGGAAGGGGACATCTCGCTTCCATTGGCTATACCACAAATGCGGTCTTTGCGGCTCTTATAATACCCGGGTTATTTAG

Network for GWHGAAEX009272

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01814.22	Hemerythrin	54	181	1.00E-13
PF01814.22	Hemerythrin	311	444	9.00E-07
PF01814.22	Hemerythrin	662	816	1.30E-05
PF05495.11	zf-CHY	996	1071	3.60E-18
PF13639.5	zf-RING_2	1124	1166	1.50E-07
PF14599.5	zinc_ribbon_6	1171	1229	3.20E-23

Protein Sequence

>GWHPAAEX009272
MEAPFAGDGVVALMPLEPASSIDPAAPSSSSSSSLSMAASEESKSADNSPLLIFVLFHKAIRSELDRLHRAAVSFATDGGGDVHLLSDRCRFLFDIYKHHCNAEDAVIFPALDIRVKNVARTYSLEHEGESDLFGQLLHLLGSVIQGDDRFWREFASRTGAVKTSLNQHMSKEEEQVFPLLIEKFSFEEQADLVWHFFCSIPVNMMAEFLPWLSSCVSSDEHQDMIKCFLRIVPDEELLQEVIFTWLEGKHMEIIGQNQIFESNLEEHLVSRSCKLIDQSNKKVFSLESLRRRKRKLVDLNYEPGDFIGSHPINEILHWHNAIKKELNDITEEASMIQLSGDFHNLSKFDARLQFIADVCIFHGIAEDQIIFPAVDGQVSFVVEHAEEENQFNKFRLLIEKIKNAGTNSTTADFYSKLCLYADQIMDAIQKHFHSEEVEVLPLARRHFSTRKQQELLYRSLCIMPLRLLERVLPWLVSELTDEEAKSFLHNTCFAAPPSDSALVTLFYGWACKGRAADISDSCKFQCLSSEAIGCCLLEDKIESAAGSALGACTCECTPSIKVDSRSQIANMESGNNMPIAYSSTSDDDPSGREEVQGSSCVTTCRIPRLGVDDSNNLGISSIASGKVLRSFSYNSTAPLNSSLFLWETDTLSSSMENTVRPIDNIFKFHKAIQKDLEYLDVESSKLIKYNEVFMRQFCGRFRLLWGLYRAHSNAEDEIVFPALESRESLHNVSHSYTLDHKQEEKLFNDISEALSELSLLHDGLTRTDANMELLTSTSWKRKHNELVTRLQGMCKSIRVTLDHHVFREELELWPLFDKHFSIEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNLMMDMWRQTTRNTMFNEWLNEWWKGAPSCSPGETQLGSVPEGTDVQENLDQNGQMFKPGWKDIFRMNQNELEAEIRKVSRDPTLDPRRKAYLIQNLMTSRWIAAQQKLPQSNEDNKEKDFLGFSPSFRDSGKKVYGCEHYKRNCKLVAACCNKLFTCRFCHDKVSDHSMERKATSEMMCMRCLNIQPIAATCRTPSCNEFSMAKYYCTICKFFDDERMVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGMKLVEHKCREKGLESNCPICCDYLFTSSAAVRALPCGHFMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPKEYTNKIQDILCNDCDRKGTSRFHWLYHKCGLCGSYNTRVI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.710
SRP064423	SRR2545915	Juvenile tuber	47.130
SRP108465	SRR5643513	five period of Gastrodia elata	16.190
	SRR5643514	five period of Gastrodia elata	13.210
	SRR5643515	five period of Gastrodia elata	16.130
	SRR5643524	five period of Gastrodia elata	13.070
	SRR5643525	five period of Gastrodia elata	15.110
	SRR5643528	five period of Gastrodia elata	11.050
	SRR5643658	five period of Gastrodia elata	9.140
	SRR5643659	five period of Gastrodia elata	24.720
	SRR5643660	five period of Gastrodia elata	24.470
	SRR5643661	five period of Gastrodia elata	23.150
	SRR5643662	five period of Gastrodia elata	22.240
	SRR5643663	five period of Gastrodia elata	24.800
	SRR5643664	five period of Gastrodia elata	22.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.280
SRP279888	Gastro	Gastrodia elata tuber	40.72
	Juven	Juvenile tuber	28.13
	Mother_Gastro	Mother tuber of Gastrodia elata	19.25
	Mother_Juven	Mother tuber of Juvenile	26.61