Detail information of GWHGAAEX009275/evm.TU.scaffold_241.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32336.00E-53RNA polymerase III, subunit C34
nrgi|743806631|ref|XP_010927732.1|1.10E-115PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis guineensis]
trEMBLtr|M0S5L3|M0S5L3_MUSAM4.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06220_001}
TAIRAT5G237106.00E-53DNA binding;DNA-directed RNA polymerases

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000238278939283495+
Transcript Sequence

Network for GWHGAAEX009275

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05158.11RNA_pol_Rpc34121172.00E-27
PF05158.11RNA_pol_Rpc341212277.40E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03025RPC6, POLR3F RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006383Biological Processtranscription from RNA polymerase III promoter
GO:0005666Cellular ComponentDNA-directed RNA polymerase III complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.890
SRR2545915Juvenile tuber108.400
SRP108465SRR5643513five period of Gastrodia elata54.810
SRR5643514five period of Gastrodia elata59.530
SRR5643515five period of Gastrodia elata59.170
SRR5643524five period of Gastrodia elata57.970
SRR5643525five period of Gastrodia elata65.750
SRR5643528five period of Gastrodia elata90.820
SRR5643658five period of Gastrodia elata82.890
SRR5643659five period of Gastrodia elata110.250
SRR5643660five period of Gastrodia elata93.530
SRR5643661five period of Gastrodia elata95.490
SRR5643662five period of Gastrodia elata74.860
SRR5643663five period of Gastrodia elata122.890
SRR5643664five period of Gastrodia elata61.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.450
SRR6049655Rhizomagastrodiae_C368-T10_good_117.870
SRR6049656Rhizomagastrodiae_C368-T07_good_140.220
SRR6049657Rhizomagastrodiae_C368-T07_good_129.640
SRR6049658Rhizomagastrodiae_C368-T04_good_134.960
SRR6049659Rhizomagastrodiae_C368-T04_good_129.980
SRR6049660Rhizomagastrodiae_C368-T01_good_136.450
SRR6049661Rhizomagastrodiae_C368-T04_good_131.890
SRR6049662Rhizomagastrodiae_C368-T01_good_143.880
SRR6049663Rhizomagastrodiae_C368-T01_good_146.870
SRR6049664Rhizomagastrodiae_C368-T10_good_152.550
SRR6049665Rhizomagastrodiae_C368-T10_good_152.550
SRP279888GastroGastrodia elata tuber 70.55
JuvenJuvenile tuber40.29
Mother_GastroMother tuber of Gastrodia elata 32.17
Mother_JuvenMother tuber of Juvenile 27.43