Gene detail

Detail information of GWHGAAEX009282/evm.TU.scaffold_241.25

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0698	Serine/threonine protein phosphatase
nr	gi\|672154015\|ref\|XP_008797622.1\|	PREDICTED: probable protein phosphatase 2C 3 [Phoenix dactylifera]
Swissprot	tr\|Q9M9C6\|P2C15_ARATH	Probable protein phosphatase 2C 15
trEMBL	tr\|A0A059D7A1\|A0A059D7A1_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW86301.1}
TAIR	AT1G68410	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000238	374030	395897	-

Transcript Sequence
>GWHTAAEX009282 CAAAAGGTCGTCAAACCGCGTCTCCACTTCTACAGTGCTCCCCTCCCTATTTCGCACCAGCCCCATCACTCTCCCTGCTTCGTTTTCTACTCCTAGATCTGATCTCTACACTTTCTCTCATCTGCCTCCCCCTTCATATTGATATGACAAGACGGCGCCGAGGTCCCCTGCTGGCGTAAATCCAGGTATAGTCTGCTCCTGATATGTCGGCAGCCGGCAGTAGCGATGTATCGCAGCAGGGAGGAAACGAGATTGTTCCTCTGGCTTCGCTCATCGGCCGTGAACTAAAGAGCGATATGGCGGAGAAACCCCGGGTTCGCTACGGCTGCGCTGCGCAGTCTAAAAAGGGGGAGGACTACTTCCTCATGAAAACAGATTGTCTAAGAGCTATCGGGAATCCTTCCACTTCGTTCTTCGTCTTTGCGATCTTTGATGGACACAATGGGAACGCGGCTGCGATATTTTCGAGGGACAATTTGCTGAATAACGTAATGGATGCGATTCCTAGCGGGCTTCACAGGGAGGAATGGCTTCATGCTCTTCCACGTGCTTTAGTTTCAGGGTTCGTGAAGACTGATAAGGAGTTTCAGAACGAAGGGCAATCATCGGGGACTACTGTTACATTTGTGATTATTGATGGCTGGACCATTACGGTGGCATCTGTGGGAGATTCTCGTTGTATCCTAGATGCTCAGGGAACTGTTTCTCACCTGACAGTTGATCATAGGCTAGAAGAAAATGCAGAAGAGAGGGAAAGGGTGACTGCTAGTGGAGGTGCAGTTGGAAGGCTTAACATTGTGGGCGGTGCTGAGATTGGCCCCCTTCGATGTTGGCCTGGGGGCTTGTGCCTGTCTAGATCAATTGGAGATATGGATGTAGGGGAGTTTATTGTGCCGATACCATATGTTAAGCAAGTGAAGTTATCACACTTTGGTGGAAGGCTAATAATTGCTTCGGATGGCATTTGGGATGCATTACCATCTGAGATAGCTGCAAAGTGTTGCCGTGGGTTACCTGCTGAACTTGCTTCTAGACAAGTTGTAAAGGAAGCATTGAAGAAGAGGGGGTTGGCTGATGATACAACGTGCATTGTTGTTGACATAAGTTTACCAGATCTTACAGTAGTAGAAGTGCCATCACTACCTTCCAAGAAGATGAGTAAACTAAAATCTTTGATTTTCCGTAAAAAGGTTAAGGATTCTGATAATAAATTTGCAAAGCAGTCTCCTGCTGGTATGGTAGAAGAACTATTTGAAGATGGCTCGGCTATATTGGCAGAGAGGCTAGGGAATGCGTTGTCGTCTTCACAGCTGACAGCATCAGGCCTTTATATATGTGCCATTTGCCACACGGATCTAGTGACACATGACTCCATCCTTGCCACCAGCTCAGGGACATGGGAAGGCTCTTTCCTGTGTGTTGCTTGTCGTAACAAGAAGGAAGCAATAAAGGTAGGTAGGCATCCCAATCCTCTCCAAGTGCCGTAACCCTCATAAAACCCCTCTCTCTCGTTCGGTTATAATTAATTATATTTTAACTAAAATTTAATATTTATAAAATAAGCACTTTCATATTTGCTCTGTAAATATTAAAGGTTATGTGCTGAATATAGTATAGTAGTATTTGTAATTTGGGTGCTATGTTTTAAGCAAAATTTCTGGAAATATCAATGATATTTCTCAATGTCTGCCTCAGGCACCTATGTGATATATTATTTTAAATAAATAAATAAAAATAAAAATTGGGGGGATGCAGCGAAATAAATATTTTTAAAGGACTTGCGTGCAATTTCTTGTGCAAGATTTGGAATTTTTATGATTGTTCCAATTTTTAGTATTAAAGCTAATTAATGATGCTTGCATAGTTT

Network for GWHGAAEX009282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	66	285	7.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.890
SRP064423	SRR2545915	Juvenile tuber	46.410
SRP108465	SRR5643513	five period of Gastrodia elata	59.390
	SRR5643514	five period of Gastrodia elata	48.170
	SRR5643515	five period of Gastrodia elata	63.550
	SRR5643524	five period of Gastrodia elata	50.940
	SRR5643525	five period of Gastrodia elata	97.010
	SRR5643528	five period of Gastrodia elata	78.970
	SRR5643658	five period of Gastrodia elata	92.070
	SRR5643659	five period of Gastrodia elata	68.590
	SRR5643660	five period of Gastrodia elata	71.050
	SRR5643661	five period of Gastrodia elata	71.430
	SRR5643662	five period of Gastrodia elata	63.620
	SRR5643663	five period of Gastrodia elata	75.790
	SRR5643664	five period of Gastrodia elata	65.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.160
SRP279888	Gastro	Gastrodia elata tuber	77.51
	Juven	Juvenile tuber	82.94
	Mother_Gastro	Mother tuber of Gastrodia elata	104.17
	Mother_Juven	Mother tuber of Juvenile	110.86