Detail information of GWHGAAEX009285/evm.TU.scaffold_241.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302338833|ref|YP_003804039.1|2.00E-21RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM 11293]
KOGKOG01186.00E-89FOG: RRM domain
nrgi|719976998|ref|XP_010248714.1|9.92E-102PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Nelumbo nucifera]
Swissprottr|P19682|ROC3_NICSY2.00E-9128 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBLtr|A0A067K455|A0A067K455_JATCU6.00E-98Uncharacterized protein {ECO:0000313|EMBL:KDP31006.1}
TAIRAT4G247706.00E-8931-kDa RNA binding protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000238452166466665+
Transcript Sequence

Network for GWHGAAEX009285

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_12703398.00E-19
PF00076.21RRM_13634331.50E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms113.800
SRR2545915Juvenile tuber112.950
SRP108465SRR5643513five period of Gastrodia elata94.860
SRR5643514five period of Gastrodia elata80.710
SRR5643515five period of Gastrodia elata76.750
SRR5643524five period of Gastrodia elata69.930
SRR5643525five period of Gastrodia elata38.440
SRR5643528five period of Gastrodia elata20.270
SRR5643658five period of Gastrodia elata20.180
SRR5643659five period of Gastrodia elata163.340
SRR5643660five period of Gastrodia elata182.750
SRR5643661five period of Gastrodia elata189.420
SRR5643662five period of Gastrodia elata201.030
SRR5643663five period of Gastrodia elata181.500
SRR5643664five period of Gastrodia elata224.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1105.650
SRR6049655Rhizomagastrodiae_C368-T10_good_177.420
SRR6049656Rhizomagastrodiae_C368-T07_good_1108.870
SRR6049657Rhizomagastrodiae_C368-T07_good_1100.950
SRR6049658Rhizomagastrodiae_C368-T04_good_178.980
SRR6049659Rhizomagastrodiae_C368-T04_good_172.950
SRR6049660Rhizomagastrodiae_C368-T01_good_1107.120
SRR6049661Rhizomagastrodiae_C368-T04_good_188.370
SRR6049662Rhizomagastrodiae_C368-T01_good_1118.020
SRR6049663Rhizomagastrodiae_C368-T01_good_1108.880
SRR6049664Rhizomagastrodiae_C368-T10_good_1101.570
SRR6049665Rhizomagastrodiae_C368-T10_good_1101.570
SRP279888GastroGastrodia elata tuber 188.72
JuvenJuvenile tuber125.29
Mother_GastroMother tuber of Gastrodia elata 17.56
Mother_JuvenMother tuber of Juvenile 40.98