Detail information of GWHGAAEX009286/evm.TU.scaffold_241.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384153678|ref|YP_005536494.1| | 2.00E-25 | serine/threonine protein kinase [Amycolatopsis mediterranei S699] |
| nr | gi|514763333|ref|XP_004965247.1| | 5.03E-123 | PREDICTED: leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1-like [Setaria italica] |
| Swissprot | tr|Q9SKB2|SBIR1_ARATH | 3.00E-118 | Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (Precursor) |
| trEMBL | tr|K3XWK2|K3XWK2_SETIT | 2.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si006310m} |
| TAIR | AT2G31880 | 1.00E-117 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000238 | 467720 | 469442 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009286
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 119 | 332 | 2.10E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.290 |
| SRR2545915 | Juvenile tuber | 5.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.740 |
| SRR5643514 | five period of Gastrodia elata | 10.730 | |
| SRR5643515 | five period of Gastrodia elata | 15.140 | |
| SRR5643524 | five period of Gastrodia elata | 12.350 | |
| SRR5643525 | five period of Gastrodia elata | 69.290 | |
| SRR5643528 | five period of Gastrodia elata | 67.130 | |
| SRR5643658 | five period of Gastrodia elata | 68.360 | |
| SRR5643659 | five period of Gastrodia elata | 14.400 | |
| SRR5643660 | five period of Gastrodia elata | 13.960 | |
| SRR5643661 | five period of Gastrodia elata | 18.080 | |
| SRR5643662 | five period of Gastrodia elata | 30.500 | |
| SRR5643663 | five period of Gastrodia elata | 27.420 | |
| SRR5643664 | five period of Gastrodia elata | 28.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.02 |
| Juven | Juvenile tuber | 8.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.15 | |
| Mother_Juven | Mother tuber of Juvenile | 30.08 |