Gene detail

Detail information of GWHGAAEX009288/evm.TU.scaffold_241.31

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1737	Oxysterol-binding protein
nr	gi\|672175887\|ref\|XP_008808011.1\|	PREDICTED: oxysterol-binding protein-related protein 1D isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9SAF0\|ORP1D_ARATH	Oxysterol-binding protein-related protein 1D
trEMBL	tr\|M0TWR4\|M0TWR4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P02070_001}
TAIR	AT1G13170	OSBP(oxysterol binding protein)-related protein 1D

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000238	512369	548818	-

Transcript Sequence
>GWHTAAEX009288 ATGAATCCGCTCTGCTGCATTGCGCCTGTATCCCTGGATCGCGGGGAGCGCGGGAGCACACAGGTTCTGTCACTGAAAGCGAATGTGAAAGCCACTGCGGGTTGGGATACTGCGAGAATCTCGTCGAGCAACCTGATTGCACTATCGCAAGTGACGATGGGGACGGGCAATCCGGAGTTCGGACAGGGGTGTGAAACAGAGGATGGGAATGGAAAGGTGGCGGGGATTTTGTACAAATGGGTGAATTACGGAAAAGGATGGAGATCGCGATGGTTCGTTCTCCAGGAGGGGGTTTTGTCGTACTATAAGGTGCACGGGCCGGACAAGATATCTCTGGGGTCGGCTTGCGAGTCAAATGGTGTGCGGGTGATTGGCGAGGACTCACAACGGAGGGTGAAGAGAGAGCAGAGGATGCTAGAAGTGGCTGGACACGTGGAAATGAAGCAGTGGAAACCTTTTGGGGTGATTCATTTGAAGGTTTCTTCGATTCGTTCAAGCAAGTCAGATGATAAAAGGCTGTCTATTTTCACTGGTACAAAGACTCTGCATTTACGTTGTGAATCACGGGAGGATCGTAGTTCTTGGATTGAAGCATTACTTCTGGCAAAAGATCTGTTTCCTCGTTTTCCAGCAAGCAATGATCTAACAACCTCTATAGATGTTGCTATTTCTACAGAAAAATTGCGAAATCGGTTATTGGAGGAAGGGTTGGGTGAAACAGTTATAAAAGATTGCGAGTCTATTGTGTTATGTGAAACATCTGAGCTACTGAACCATCTGAGGTGTCTTCAGCAAAAACACGTTGTCTTGCTTGATGCACTAAGGCAGTTGGAGACAGAAAAGCTAGAGCTGGAGACTACTGTGGTAGATGAGACAAAAAAACGGGAGGCAAATCGTGGGCTGGGGAATGGAAGAAGTAGCGATTTCTATTCAGTTATGTCAGATGGCAGTGCAACTGATTCCGATGTGGATATTGAAAGTCAAGGAGCAGATGGAGAAACAGATGATGATGATGGAATTTATTTTGACACAAGGGATTTCTTGTCTTCAGAATTTCTAAGGAGTGCTTCATATCGTAGTCAGGATTCCAAAAGCAATGGAGGCATTGATATAAATGGCAAAGCTTTTTATGTTCCAGACATAATGCAAGCTAACGGTAAAAGAGTCCAAATTTTGGAATATCCCTTTGTGAAAAGGAGGGAAAAGTTGCCGGAGCCAAAAGAAAAAGAAAAACCTATTGGTCTGTGGTCAATTATTAAAGAAAACATCGGAAAAGATCTTTCTGGTGTTTGTCTTCCTGTTTACTTCAATGAGCCTCTTTCTTCTTTGCAGAAATGTTTTGAAGATTTGGAATACTCACACTTAGTTGATCAAGCATTTGAATGGGGAAAACAGGGAAATAACTTGATGAGAATTCTTAGTATTGCTGCGTTTGCAGTATCAGGATATGCTTCTACTGAAGGCCGACAATGCAAACCGTTTAATCCACTTCTTGGTGAAACATATGAAGCTGATTACCCTGATAAAGGACTTCGTTTCATTTCTGAGAAGGTGAGTCACCATCCCATGGTCGTTGCCTGTCACTGTGAAGGCAGAGGATGGAAATTCTGGGGTGATTCCAATCTGAAAGGGAAATTCTGGGGTCGATCTATTCAGCTAGATCCTGTTGGAATATTAACACTGATGTTTGAAGATGGGGAGACTTTCCAGTGGAGTAAAGTGACAACTTCAATTTATAATATCATTCTTGGTAAAATCTACTGCGATCACTATGGTACCATGCGCATAAAAGGCTGCGGTCAGTATTCTTGCAAACTCAAATTCAAGGAGCAGTCCATCATTGATCGTAACCCACATCAGGTGCATGGATTTGTACAAGATAATTTAACGGGAAACAAGGTTGCAATGCTTCTGGGCAAGTGGGACGAAGCAATGTACTATGTACTCGGTGACCCTAGTACTAAGCCAAAAGGTTATGATCCAATGTCTGAGGCTGTTCTTCTCTGGGAGCGTGACAAGTCTATTACTCAAACCAGATACAACCTTACGCCCTTTGCTATATCATTGAACGAATTAACACCTGGATTGTTGGACAAATTGCCTCCGACAGATTCACGTCTTAGGCCTGATCAAAGGCACTTAGAAAATGGAGAATATGAGTTAGCTAATGCTGAAAAGCTTAGACTTGAACATTTGCAAAGACAGGCAAGGAAATTGCAAGAGAAGGGATGGCAACCCAGGTGGTTTAGAAAAGATGCCGAGGATGATAGCTATCAGTATGTTGGAGGATACTGGGAAGCAAGGGAGGAAAGAAAGTGGAATAAAATTCCTAATATATTTGGTCATAATGGTGGCTATGCACAGTGTTGA

Network for GWHGAAEX009288

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15413.5	PH_11	75	199	3.80E-20
PF01237.17	Oxysterol_BP	415	766	7.90E-120

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.010
SRP064423	SRR2545915	Juvenile tuber	8.810
SRP108465	SRR5643513	five period of Gastrodia elata	13.590
	SRR5643514	five period of Gastrodia elata	11.470
	SRR5643515	five period of Gastrodia elata	10.850
	SRR5643524	five period of Gastrodia elata	10.050
	SRR5643525	five period of Gastrodia elata	7.040
	SRR5643528	five period of Gastrodia elata	6.010
	SRR5643658	five period of Gastrodia elata	5.990
	SRR5643659	five period of Gastrodia elata	10.150
	SRR5643660	five period of Gastrodia elata	8.220
	SRR5643661	five period of Gastrodia elata	6.870
	SRR5643662	five period of Gastrodia elata	3.130
	SRR5643663	five period of Gastrodia elata	4.940
	SRR5643664	five period of Gastrodia elata	2.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.580
SRP279888	Gastro	Gastrodia elata tuber	2.91
	Juven	Juvenile tuber	8.94
	Mother_Gastro	Mother tuber of Gastrodia elata	2.21
	Mother_Juven	Mother tuber of Juvenile	3.32