Detail information of GWHGAAEX009290/evm.TU.scaffold_241.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530780348|ref|YP_008432154.1|3.00E-07actin [Thermofilum sp. 1910b]
KOGKOG06780Actin-related protein Arp2/3 complex, subunit Arp3
nrgi|743765400|ref|XP_010912922.1|0PREDICTED: actin-related protein 3-like [Elaeis guineensis]
Swissprottr|Q6K908|ARP3_ORYSJ0Actin-related protein 3
trEMBLtr|A0A067GTW6|A0A067GTW6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO82125.1}
TAIRAT1G131800Actin-like ATPase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000238570728609619+
Transcript Sequence

Network for GWHGAAEX009290

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00022.18Actin62461.70E-51
PF00022.18Actin2764182.60E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18584ACTR3, ARP3 Autophagy - yeast map04138
Tight junctionmap04530

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.840
SRR2545915Juvenile tuber26.770
SRP108465SRR5643513five period of Gastrodia elata32.860
SRR5643514five period of Gastrodia elata36.380
SRR5643515five period of Gastrodia elata36.720
SRR5643524five period of Gastrodia elata44.440
SRR5643525five period of Gastrodia elata59.700
SRR5643528five period of Gastrodia elata53.850
SRR5643658five period of Gastrodia elata61.900
SRR5643659five period of Gastrodia elata39.060
SRR5643660five period of Gastrodia elata38.500
SRR5643661five period of Gastrodia elata40.370
SRR5643662five period of Gastrodia elata34.190
SRR5643663five period of Gastrodia elata39.510
SRR5643664five period of Gastrodia elata31.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.270
SRR6049655Rhizomagastrodiae_C368-T10_good_131.800
SRR6049656Rhizomagastrodiae_C368-T07_good_126.650
SRR6049657Rhizomagastrodiae_C368-T07_good_122.750
SRR6049658Rhizomagastrodiae_C368-T04_good_123.180
SRR6049659Rhizomagastrodiae_C368-T04_good_126.320
SRR6049660Rhizomagastrodiae_C368-T01_good_124.340
SRR6049661Rhizomagastrodiae_C368-T04_good_119.940
SRR6049662Rhizomagastrodiae_C368-T01_good_135.140
SRR6049663Rhizomagastrodiae_C368-T01_good_134.370
SRR6049664Rhizomagastrodiae_C368-T10_good_136.740
SRR6049665Rhizomagastrodiae_C368-T10_good_136.740
SRP279888GastroGastrodia elata tuber 40.28
JuvenJuvenile tuber22.97
Mother_GastroMother tuber of Gastrodia elata 34.72
Mother_JuvenMother tuber of Juvenile 31.17