Detail information of GWHGAAEX009291/evm.TU.scaffold_241.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG42061.00E-126Spliceosomal protein snRNP-U1A/U2B
nrgi|695062752|ref|XP_009419857.1|1.04E-137PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Musa acuminata subsp. malaccensis]
Swissprottr|O22922|RU2B1_ARATH4.00E-127U2 small nuclear ribonucleoprotein B''
trEMBLtr|M0REL2|M0REL2_MUSAM5.00E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P01850_001}
TAIRAT2G302601.00E-126U2 small nuclear ribonucleoprotein B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000238609870627908-
Transcript Sequence

Network for GWHGAAEX009291

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_112824.60E-09
PF00076.21RRM_11652242.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11094SNRPB2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.460
SRR2545915Juvenile tuber50.000
SRP108465SRR5643513five period of Gastrodia elata50.310
SRR5643514five period of Gastrodia elata48.430
SRR5643515five period of Gastrodia elata48.070
SRR5643524five period of Gastrodia elata49.570
SRR5643525five period of Gastrodia elata47.780
SRR5643528five period of Gastrodia elata49.910
SRR5643658five period of Gastrodia elata43.870
SRR5643659five period of Gastrodia elata56.650
SRR5643660five period of Gastrodia elata57.870
SRR5643661five period of Gastrodia elata53.090
SRR5643662five period of Gastrodia elata51.190
SRR5643663five period of Gastrodia elata54.680
SRR5643664five period of Gastrodia elata54.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_146.080
SRR6049655Rhizomagastrodiae_C368-T10_good_165.050
SRR6049656Rhizomagastrodiae_C368-T07_good_150.710
SRR6049657Rhizomagastrodiae_C368-T07_good_144.110
SRR6049658Rhizomagastrodiae_C368-T04_good_143.620
SRR6049659Rhizomagastrodiae_C368-T04_good_149.170
SRR6049660Rhizomagastrodiae_C368-T01_good_142.630
SRR6049661Rhizomagastrodiae_C368-T04_good_147.590
SRR6049662Rhizomagastrodiae_C368-T01_good_152.530
SRR6049663Rhizomagastrodiae_C368-T01_good_147.370
SRR6049664Rhizomagastrodiae_C368-T10_good_158.690
SRR6049665Rhizomagastrodiae_C368-T10_good_158.690
SRP279888GastroGastrodia elata tuber 52.66
JuvenJuvenile tuber53.14
Mother_GastroMother tuber of Gastrodia elata 42.08
Mother_JuvenMother tuber of Juvenile 59.58