Detail information of GWHGAAEX009293/evm.TU.scaffold_241.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430745591|ref|YP_007204720.1| | 2.00E-30 | phosphopantothenoylcysteine synthetase/decarboxylase [Singulisphaera acidiphila DSM 18658] |
| KOG | KOG0672 | 9.00E-78 | Halotolerance protein HAL3 (contains flavoprotein domain) |
| nr | gi|743814338|ref|XP_010930004.1| | 4.28E-82 | PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q69K55|HAL3_ORYSJ | 6.00E-83 | Phosphopantothenoylcysteine decarboxylase |
| trEMBL | tr|M0TWR9|M0TWR9_MUSAM | 3.00E-82 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02120_001} |
| TAIR | AT3G18030 | 9.00E-78 | HAL3-like protein A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000238 | 673453 | 696089 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009293
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02441.18 | Flavoprotein | 17 | 170 | 3.80E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01598 | PPCDC, coaC | Metabolic pathways | map01100 |
| Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.050 |
| SRR2545915 | Juvenile tuber | 29.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.570 |
| SRR5643514 | five period of Gastrodia elata | 32.320 | |
| SRR5643515 | five period of Gastrodia elata | 33.020 | |
| SRR5643524 | five period of Gastrodia elata | 35.040 | |
| SRR5643525 | five period of Gastrodia elata | 51.110 | |
| SRR5643528 | five period of Gastrodia elata | 46.270 | |
| SRR5643658 | five period of Gastrodia elata | 57.450 | |
| SRR5643659 | five period of Gastrodia elata | 38.170 | |
| SRR5643660 | five period of Gastrodia elata | 37.170 | |
| SRR5643661 | five period of Gastrodia elata | 36.600 | |
| SRR5643662 | five period of Gastrodia elata | 42.250 | |
| SRR5643663 | five period of Gastrodia elata | 44.830 | |
| SRR5643664 | five period of Gastrodia elata | 44.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.97 |
| Juven | Juvenile tuber | 35.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.44 | |
| Mother_Juven | Mother tuber of Juvenile | 36.58 |