Detail information of GWHGAAEX009295/evm.TU.scaffold_241.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1560 | 0 | Translation initiation factor 3, subunit h (eIF-3h) |
| nr | gi|743765659|ref|XP_010913058.1| | 0 | PREDICTED: eukaryotic translation initiation factor 3 subunit H-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9C5Z2|EIF3H_ARATH | 0 | Eukaryotic translation initiation factor 3 subunit H {ECO:0000255|HAMAP-Rule:MF_03007} |
| trEMBL | tr|M0TAQ2|M0TAQ2_MUSAM | 0 | Eukaryotic translation initiation factor 3 subunit H {ECO:0000256|HAMAP-Rule:MF_03007} |
| TAIR | AT1G10840 | 0 | translation initiation factor 3 subunit H1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000238 | 714408 | 744239 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009295
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01398.20 | JAB | 23 | 126 | 2.80E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03247 | EIF3H | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003743 | Molecular Function | translation initiation factor activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005852 | Cellular Component | eukaryotic translation initiation factor 3 complex |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 101.300 |
| SRR2545915 | Juvenile tuber | 92.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.680 |
| SRR5643514 | five period of Gastrodia elata | 61.040 | |
| SRR5643515 | five period of Gastrodia elata | 52.550 | |
| SRR5643524 | five period of Gastrodia elata | 59.270 | |
| SRR5643525 | five period of Gastrodia elata | 65.070 | |
| SRR5643528 | five period of Gastrodia elata | 63.680 | |
| SRR5643658 | five period of Gastrodia elata | 59.110 | |
| SRR5643659 | five period of Gastrodia elata | 60.890 | |
| SRR5643660 | five period of Gastrodia elata | 64.170 | |
| SRR5643661 | five period of Gastrodia elata | 55.030 | |
| SRR5643662 | five period of Gastrodia elata | 59.100 | |
| SRR5643663 | five period of Gastrodia elata | 59.960 | |
| SRR5643664 | five period of Gastrodia elata | 59.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 81.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 85.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 82.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 84.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 117.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 133.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 100.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 101.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 88.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 97.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 69.95 |
| Juven | Juvenile tuber | 100.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 68.78 | |
| Mother_Juven | Mother tuber of Juvenile | 77.33 |