Detail information of GWHGAAEX009296/evm.TU.scaffold_241.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|527183029|gb|EPS57634.1|2.56E-23hypothetical protein M569_17184, partial [Genlisea aurea]
Swissprottr|P43254|COP1_ARATH7.00E-06E3 ubiquitin-protein ligase COP1
trEMBLtr|S8BTA5|S8BTA5_9LAMI1.00E-23Uncharacterized protein {ECO:0000313|EMBL:EPS57634.1} (Fragment)
TAIRAT4G131001.00E-22RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000238745629746586+
Transcript Sequence

Network for GWHGAAEX009296

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_31091536.40E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.150
SRR2545915Juvenile tuber5.560
SRP108465SRR5643513five period of Gastrodia elata89.960
SRR5643514five period of Gastrodia elata120.340
SRR5643515five period of Gastrodia elata81.940
SRR5643524five period of Gastrodia elata103.510
SRR5643525five period of Gastrodia elata7.560
SRR5643528five period of Gastrodia elata14.540
SRR5643658five period of Gastrodia elata6.670
SRR5643659five period of Gastrodia elata3.570
SRR5643660five period of Gastrodia elata6.360
SRR5643661five period of Gastrodia elata7.240
SRR5643662five period of Gastrodia elata5.100
SRR5643663five period of Gastrodia elata4.080
SRR5643664five period of Gastrodia elata5.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1103.620
SRR6049655Rhizomagastrodiae_C368-T10_good_171.970
SRR6049656Rhizomagastrodiae_C368-T07_good_190.840
SRR6049657Rhizomagastrodiae_C368-T07_good_162.750
SRR6049658Rhizomagastrodiae_C368-T04_good_189.270
SRR6049659Rhizomagastrodiae_C368-T04_good_1107.830
SRR6049660Rhizomagastrodiae_C368-T01_good_172.700
SRR6049661Rhizomagastrodiae_C368-T04_good_160.310
SRR6049662Rhizomagastrodiae_C368-T01_good_175.590
SRR6049663Rhizomagastrodiae_C368-T01_good_192.850
SRR6049664Rhizomagastrodiae_C368-T10_good_1130.890
SRR6049665Rhizomagastrodiae_C368-T10_good_1130.890
SRP279888GastroGastrodia elata tuber 2.26
JuvenJuvenile tuber7.54
Mother_GastroMother tuber of Gastrodia elata 32.03
Mother_JuvenMother tuber of Juvenile 13.55