Gene detail

Detail information of GWHGAAEX009306/evm.TU.scaffold_242.6

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695053649\|ref\|XP_009414925.1\|	4.84E-46	PREDICTED: auxin-responsive protein IAA4-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8H174\|IAA31_ARATH	4.00E-34	Auxin-responsive protein IAA31
trEMBL	tr\|M0TUT7\|M0TUT7_MUSAM	2.00E-46	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR	AT3G17600	1.00E-33	indole-3-acetic acid inducible 31

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	101949	103891	+

Transcript Sequence
>GWHTAAEX009306 GTTCTAATTAATATTTGATTGAATAAATAATTATATATTCTTAGTTGATTTCATCATGAGGTTATTTAAGCTTCGAGTACTTTTTCAGACGATTGATTTATAATGCATCATTAATACGATTTAGAATGGGTATTATCCATGAATGTTTGCATTGAACAAGTATAGAGATGGCCTCAATTTCGCTGAATCAGGGGATTTGTGGCTGTTGGAACAAATAAAAACTCATCAAAACATCTCTATTCCATTGACAATGGTGGCCATAGATTTGTAATCTGCTGAATGAGATCTTCAAGTTTATCCGCTTTGACTGTAGAGTGGTTCGTTAGGAACACACAAGTCTTGAACAGTAGAGTACAAGCAAAACCAAAATAAAAAATGGGATCAACTATTCTGAGATTCCACGTGGCAATACCGCCTATATTAAGGAATGTTCTAAGCCTACTTCTTCAGGTTCCAAAGGCCGCTCTTTTTTGTTATTGATTAGTTTGAGATATAAAATTTTCAGCAATGGAAAGGGAAGCAAAGTCTCCTTCTTCTTCTACAGACAGCTGCGGCAGCCATCCTTCTCGTTGCTCCACCGTCTTGTCTGAAGACACAGCAGAAGATAGCAGCACAGAGCTAAGGCTTGGGCTCACCGCTGCCCTGCCAAGAAAAACTAATCATCAAATTCCAAGAGATAATCAATTGCAAGCTGCCAACTGGCCTCCAATCAAGCATTTCATGGCAGCAGCACTCAAGGGGAGAAAAAAGCGCCCCTCAAAAATGCCCACATTTTTCATCAAAGTTTATATGGAAGGAATTCCAATAGGGAGGAAGATTGATTTGTATGCTGTGGATGGATACGATGGCTTGACAGAGAAGATTTCCAATTTGTTTACAGCTCTTATACTCTCGTCTGGTCTTGTTCGATTCATTCCGGAAAAGAATTATGTGCTCACTTATGAGGACAATGAAGGAGACTGGATGATGGTGGGAGATGTTCCCTGGGAGCATTTCTTGATCACAGTGAAGAGATTGAAGGTTGCTAGAGCAGACAAATGCTGATCAATATATTTTGTTAGTTCAGCTCTGAAATTTTTTAGGAATAAATATAATTTAACATTGCTTGTATGTGTCTTGAATCTGTGATTGGGAGATCTGATTGATATTAACTATTGAGAGAGGCAAAAGCACTAGATGTGGGCTAATCCAATGAACAATGAGTGGTCCTTCCTCTCTGGATGGTGCATGTGAATGGCTTAAACATTCACCCATCACATTCTAGAAAGAAAACTGAAGATAATTAATGTTATGGGCTTGTTTTATTCTCTTTCGTATATTTTTTTTTTTATTTCAAGGGTAAATATCATCTTTTTTCGTGGTAGTGTGGTCCTTACGGACAGCCATGGCTTTATTTGCTTGCTAAGAAAATGATTGTCTCTTGGAAATGGCTTCTGCCATATATAGATTCAACTA

Network for GWHGAAEX009306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.15	AUX_IAA	39	174	5.80E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.110
SRP064423	SRR2545915	Juvenile tuber	0.120
SRP108465	SRR5643513	five period of Gastrodia elata	0.170
	SRR5643514	five period of Gastrodia elata	0.980
	SRR5643515	five period of Gastrodia elata	0.420
	SRR5643524	five period of Gastrodia elata	1.040
	SRR5643525	five period of Gastrodia elata	0.500
	SRR5643528	five period of Gastrodia elata	0.690
	SRR5643658	five period of Gastrodia elata	4.230
	SRR5643659	five period of Gastrodia elata	0.050
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.050
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.080
	SRR5643664	five period of Gastrodia elata	0.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.160
SRP279888	Gastro	Gastrodia elata tuber	0.15
	Juven	Juvenile tuber	0.23
	Mother_Gastro	Mother tuber of Gastrodia elata	0.25
	Mother_Juven	Mother tuber of Juvenile	0.58