Detail information of GWHGAAEX009311/evm.TU.scaffold_242.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|586679531|ref|XP_006840320.1|3.04E-137hypothetical protein AMTR_s00045p00083360 [Amborella trichopoda]
Swissprottr|Q9LRP1|NPS13_ARATH3.00E-127Novel plant SNARE 13
trEMBLtr|W1P4V6|W1P4V6_AMBTC1.00E-137Uncharacterized protein {ECO:0000313|EMBL:ERN01995.1}
TAIRAT3G174409.00E-127novel plant snare 13

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000239168251191893+
Transcript Sequence

Network for GWHGAAEX009311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03908.12Sec201532315.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to ER
GO:0005484Molecular FunctionSNAP receptor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.940
SRR2545915Juvenile tuber21.670
SRP108465SRR5643513five period of Gastrodia elata23.650
SRR5643514five period of Gastrodia elata22.900
SRR5643515five period of Gastrodia elata22.100
SRR5643524five period of Gastrodia elata26.020
SRR5643525five period of Gastrodia elata42.680
SRR5643528five period of Gastrodia elata47.560
SRR5643658five period of Gastrodia elata49.610
SRR5643659five period of Gastrodia elata24.270
SRR5643660five period of Gastrodia elata24.620
SRR5643661five period of Gastrodia elata24.930
SRR5643662five period of Gastrodia elata22.430
SRR5643663five period of Gastrodia elata26.690
SRR5643664five period of Gastrodia elata25.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.260
SRR6049655Rhizomagastrodiae_C368-T10_good_126.860
SRR6049656Rhizomagastrodiae_C368-T07_good_129.310
SRR6049657Rhizomagastrodiae_C368-T07_good_126.540
SRR6049658Rhizomagastrodiae_C368-T04_good_127.290
SRR6049659Rhizomagastrodiae_C368-T04_good_125.150
SRR6049660Rhizomagastrodiae_C368-T01_good_123.280
SRR6049661Rhizomagastrodiae_C368-T04_good_125.930
SRR6049662Rhizomagastrodiae_C368-T01_good_131.600
SRR6049663Rhizomagastrodiae_C368-T01_good_129.380
SRR6049664Rhizomagastrodiae_C368-T10_good_139.600
SRR6049665Rhizomagastrodiae_C368-T10_good_139.600
SRP279888GastroGastrodia elata tuber 39.28
JuvenJuvenile tuber37.74
Mother_GastroMother tuber of Gastrodia elata 69.23
Mother_JuvenMother tuber of Juvenile 78.69