Detail information of GWHGAAEX009314/evm.TU.scaffold_242.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292492800|ref|YP_003528239.1| | 0 | adenylosuccinate lyase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG2700 | 0 | Adenylosuccinate lyase |
| nr | gi|743783434|ref|XP_010921408.1| | 0 | PREDICTED: adenylosuccinate lyase-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|M0TMD1|M0TMD1_MUSAM | 0 | Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172} |
| TAIR | AT1G36280 | 0 | L-Aspartase-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000239 | 225913 | 234829 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009314
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00206.19 | Lyase_1 | 92 | 391 | 1.20E-56 |
| PF08328.10 | ASL_C | 409 | 470 | 5.50E-27 |
| PF08328.10 | ASL_C | 493 | 548 | 1.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006188 | Biological Process | IMP biosynthetic process |
| GO:0009152 | Biological Process | purine ribonucleotide biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004018 | Molecular Function | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.510 |
| SRR2545915 | Juvenile tuber | 26.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.200 |
| SRR5643514 | five period of Gastrodia elata | 55.690 | |
| SRR5643515 | five period of Gastrodia elata | 43.070 | |
| SRR5643524 | five period of Gastrodia elata | 56.520 | |
| SRR5643525 | five period of Gastrodia elata | 24.470 | |
| SRR5643528 | five period of Gastrodia elata | 26.790 | |
| SRR5643658 | five period of Gastrodia elata | 25.390 | |
| SRR5643659 | five period of Gastrodia elata | 39.210 | |
| SRR5643660 | five period of Gastrodia elata | 46.160 | |
| SRR5643661 | five period of Gastrodia elata | 51.190 | |
| SRR5643662 | five period of Gastrodia elata | 35.960 | |
| SRR5643663 | five period of Gastrodia elata | 35.320 | |
| SRR5643664 | five period of Gastrodia elata | 27.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 31.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 64.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 67.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 49.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 49.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.14 |
| Juven | Juvenile tuber | 20.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.65 | |
| Mother_Juven | Mother tuber of Juvenile | 10.66 |