Gene detail

Detail information of GWHGAAEX009316/evm.TU.scaffold_242.14

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0988	RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference
nr	gi\|672115615\|ref\|XP_008780950.1\|	PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix dactylifera]
Swissprot	tr\|O82504\|RDR2_ARATH	RNA-dependent RNA polymerase 2
trEMBL	tr\|M5WGW0\|M5WGW0_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ12511.1}
TAIR	AT4G11130	RNA-dependent RNA polymerase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	249695	271985	-

Transcript Sequence
>GWHTAAEX009316 CTTCTTAGAAAAGATAGAGGTATATAAGATTCTAAATATTCAATTAAATTAATCTATTCATTTCTTCTCCGGCCCTACTGTTCCCTAGCCCGGCCTACGGCCAGACGCGCACGCAGAACCCGGCGCAGGAATGCGCGGGTCAGTCCGACCGGGCCAGGCTGGCCCGGTCAATACAGATACGTGTAGGTCCGGACTCAGTACGTTCCTCCCCTCTTTCAACTTACGCTTCCTTCTGCTAAACCCTTCTTCGTCCCTGCAATCGGAAGGCAATTCAGCTTCTCTGCTCACTCTCATACCATTTTTCTGCAATTTGAAGAGGCAAGAACGCTCATCCATGGAATGATGACGAACGTCCGTCGCTCGACCGTCCGCGTCTCAAACATTCCTCGCGCTGCTATCGCGGAGGAATTGCTAACCTTCTTTGAGTCGGTCGTCGGCCCGGTTTTCGCATGCGAAATCGTCTCCGCTCACCGTAACTGGATGTCTCTGGGCTTCGGCCGCGTTCAGTTCATGTCCCTCTCGGCCGCGGAGAGGGCATGTCTCCTCTTTTCCAAGGGTCCTCTTCCCTGCTTCCAGCGATCTAATCTCTTCGTTGCACCTTCTGCGGAGGACATCCTCCCCAGGGCTGTTGATGAAAGCAACCGCATCGCCGGAGCCATTCTCCACTCCGGCGTTTTGAGCGATGAAAGGAGGATAGAGGTCTTCGCCTCGTGGGAGGGTGTCTCGCTGGAGCTCATGCCGGAGAGAAAACGGATGGAGCTTTTTCTCGAGGATGGGAAGGAATGTTACAAGCTTGCCGTCTCATTTGAGGATATTACTGCTAGCCATGGCTGCTTCCTGGACGGAGGAGTTGGAAGAGGGCGGTTAAATTCTATTCTTATTCAGCTCAAGTTCGCACCCAGATTATATCAGAGAGTATCTGGCACAAACATGAAGCCAAAATTCTCTTGTGATCGCTATCATATCTGCAAAGAAGAATTTCAGTTTATTTGGTTAAGGACATCAGATTTTTCATCGACTAAAGCATTTGGCCTTTCTTCTTACCTGTGTTTGCAATTTGGAAATGACTCGTCTGCTTCTGAAATATTCAGAAATTTTCCCTTCTACGCTGAATTGGGAGACCTTATTCTAAGTAAAAAGGAGGCGTTGTGTTCGACATCAAAATTAGTTCCAATTGTTGGCTGTTCTGATAAAACCGAGCTTCCGTACGAGCTTCTTTTCCAGCTTAATTCTCTGTTTCATACACAAAAGATTTCTCTCTTACAATCTACTGACTTTTTTGATATTATTAGAAAGGAAGATTCGGAAACAATTCTAAAAATTCTTATGAAAATGCACAAGTTGAAATCTACCTGCTTTAGCCCTGTACAGTTTATTGAACGTCAACTGATGGACATGAGAAAGAAAAAGCAATCTGTGCCACCTAACATTCGTAGTTTTTCTCAAAATTTAATGAGGTGCTACCGAGCTCTCATCACTCCTTCAAAAGTTTACTTTTTAGGCCCTGAGCTAGAGAATTCTAATTACGTGATCAAGCATTTTTCAGCATATGCTTCTGATTTTCTTCGGGTTACATTTGTTGATGAGGATTGGGGTAAACTATCTTCAGATGCTCTTTCAACTAGGGTTGATCACGGGTTTAATTTGAAGACAAACAAAACAGGAGTATACTACCGAATATTGTCTATCCTGGAAGATGGGATTACTATTGGTTCAAAGAAGTTTGAATTTTTAGCGTTTTCTGCCAGTCAGCTTCGTGCTAATTCATGCTGGATGTTTTCTTCAAATGGCGATGTTACTGCAGAGAGCATCAGAATCTGGATGGGTGATTTCAACAAGATTCGTAGTGTGTCTAAATGTGCAGCTAGAATGGGTCAGCAGTTCAGCTCATCCTTCCCAGTAATGTCTGTCCACTCAAATGAAGTTGACATTATTGATGATATTTACTCCCATGCTGATGGCGTTAAGTACTGCTTTTCTGATGGCATAGGAAAAATATCTCTATCCTTTGCAGAACAAATAGCTCAAAAATGTGGAATGAAGAAAACACCTTCAGCATTCCAAATTAGATATGGAGGCTATAAGGGCGTTATAGCTGTTGATAGAACTTCTCGCAAGCTGTCACTGAGGCCTAGCATGTTGAAATTTGATTCAAACAATACTATGCTTAACATTACCAGTCATAGCAAGTACTTGCCATGCTTTTTGAATCGTGAAATAATTTGCCTCCTTTCTACATTGGGAATTGAGGATGCAGTGTTTGAAGCTATGCAACAAGATCAGATGTCCCTTTTGGACAATATGTTAAGAAACAGGCAAGCTGCCTTGTCTGTTATTAGCAAAATGCCTGGACCTGAAAAGGAAAAGGCCGAGAATATATTGATGCGTGGTTATGAGCCAAGTTCGGTGCCTTACCTCTCTATGTTGCTTAGATCTTATCGAGCTTACCAACTATCTGATATAAGAAGTAGATGCAGAATCTTTGTCCCAAAAGGTCGAATCCTCATAGGCTGTCTGGATGAAACAGGTATTTTAGACTATGGACAAATTTTTCTGAGGGTCACCATGACAAAGGAAGAGCAACAGGATAAAGATCAAATTTTCTTTAAGGAAGCTGATCTTGAAACAGCAGTCATAACTGGAAGAGTTGTCGTGACAAAAAATCCTTGCTTACACCCTGGTGACATTAGGGTACTTGAGGCTGTTTGTGATCCACGATTGGATGAGATGGGGCTGGTTGATTGCGCTGTATTCCCCCAGAAGGGAGAAAGGCCACATCCAAATGAGTGCTCTGGTGGAGATTTGGATGGGGACTTGTATTTTGTATCTTGGGATGAAAGACTTGTGCCATTACAATCTGATCCACCAATGGACTATATTGGACTTAGGCCACGTCTTCAGGATCATGAAGTCACATTAGAGGAAATCCATGAGTTTTTTGTCAATTACATGATTAATGATAACCTTGGCGCCATCTCAACCTCTCATCTTGTTTATGCGGACTCTGAACCACTTAAAGCTCGAAGCCTAAAGTGCCTTCAGCTTGCAAACCTGCACTCCATGGCTGTGGACTTTGCCAAAACAGGAGTTCCAGCTGAGATGCCCAGGATATTAAGACCTAAGGAATTTCCTGATTTCATGGAAAGATGGGACAGATCCATGTATACCTCCAAAGGCATTCTGGGAAAACTCTATAGGGCTGCCATAAACTATGAAAACTTGGAAATAAGCAATGATATCACATGGTCCCAAGAATTTGCGGCTGCTTCATATGATATTGATCTCGAAGTGGAAGGTTTTGAAGCGTTCTTAAAGCCTGCCGAAGATTTCTATAATCAGTATGCCGAAAAGCTGGGCTTGTTGATGAACTATTTCGGAGCGCAGCATGAAGATGAGATGCTTACAGGCTATGTGAGGAGCAGCTCAGCATATGTCCTGAGGGACAAGAAGAAATTTGGGGATATTGCTGACAGGATTATGATTGCGGTCAAGAGTTTGCATGAGGAGGTTAAGGGATGGTGGTTTAATGGTTGTCGTGAAAGTGAGTCATTAAGGATGGCATCTGCATGGTATCACGTAACATGTCATCCGGCGTATTGGACGCCCAACAAGTTTCTTAGCTTTCCATGGATTCTTTGGGATGCTTTGCTAAGCATAAAAGATTCCAAGACCTATAGGAGGGGAAGAAGAACGAAGGAAGACGCTTTGTGAAATCCCACTGTAACAATTGAGCAGTCTAATTTAACTTTCTGAGATTATTCATCGTAACTCATGCTTTTTTTTCTGCAGGGAAGATATCAACATTATCGAATGTTGTCTTCTTCAGCCATGTTTTCATTTTTGCATATGTTGTTGGTGCAGTCCAGGGTTGGTTTCATGGAAGTAGGGAGATTGGACAGTGCACCGTCATCCATTTGAATTTCAATGTAAGTTTTAATATGTTCTGACATTGAAATATATAAATAAAGTAAAATAAAATTATATGATGAATTCATCGTTCCAGTTAGTCATCATGCTCATATTTTTATCAAGAGATATTTACCGAAATAGTCTCCCGACTACTTCATGCTGGCTAAGTTTGTCCAAGAC

Network for GWHGAAEX009316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05183.11	RdRP	379	954	1.70E-178

Protein Sequence

>GWHPAAEX009316
MMTNVRRSTVRVSNIPRAAIAEELLTFFESVVGPVFACEIVSAHRNWMSLGFGRVQFMSLSAAERACLLFSKGPLPCFQRSNLFVAPSAEDILPRAVDESNRIAGAILHSGVLSDERRIEVFASWEGVSLELMPERKRMELFLEDGKECYKLAVSFEDITASHGCFLDGGVGRGRLNSILIQLKFAPRLYQRVSGTNMKPKFSCDRYHICKEEFQFIWLRTSDFSSTKAFGLSSYLCLQFGNDSSASEIFRNFPFYAELGDLILSKKEALCSTSKLVPIVGCSDKTELPYELLFQLNSLFHTQKISLLQSTDFFDIIRKEDSETILKILMKMHKLKSTCFSPVQFIERQLMDMRKKKQSVPPNIRSFSQNLMRCYRALITPSKVYFLGPELENSNYVIKHFSAYASDFLRVTFVDEDWGKLSSDALSTRVDHGFNLKTNKTGVYYRILSILEDGITIGSKKFEFLAFSASQLRANSCWMFSSNGDVTAESIRIWMGDFNKIRSVSKCAARMGQQFSSSFPVMSVHSNEVDIIDDIYSHADGVKYCFSDGIGKISLSFAEQIAQKCGMKKTPSAFQIRYGGYKGVIAVDRTSRKLSLRPSMLKFDSNNTMLNITSHSKYLPCFLNREIICLLSTLGIEDAVFEAMQQDQMSLLDNMLRNRQAALSVISKMPGPEKEKAENILMRGYEPSSVPYLSMLLRSYRAYQLSDIRSRCRIFVPKGRILIGCLDETGILDYGQIFLRVTMTKEEQQDKDQIFFKEADLETAVITGRVVVTKNPCLHPGDIRVLEAVCDPRLDEMGLVDCAVFPQKGERPHPNECSGGDLDGDLYFVSWDERLVPLQSDPPMDYIGLRPRLQDHEVTLEEIHEFFVNYMINDNLGAISTSHLVYADSEPLKARSLKCLQLANLHSMAVDFAKTGVPAEMPRILRPKEFPDFMERWDRSMYTSKGILGKLYRAAINYENLEISNDITWSQEFAAASYDIDLEVEGFEAFLKPAEDFYNQYAEKLGLLMNYFGAQHEDEMLTGYVRSSSAYVLRDKKKFGDIADRIMIAVKSLHEEVKGWWFNGCRESESLRMASAWYHVTCHPAYWTPNKFLSFPWILWDALLSIKDSKTYRRGRRTKEDAL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003968	Molecular Function	RNA-directed RNA polymerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.160
SRP064423	SRR2545915	Juvenile tuber	15.540
SRP108465	SRR5643513	five period of Gastrodia elata	7.860
	SRR5643514	five period of Gastrodia elata	7.310
	SRR5643515	five period of Gastrodia elata	7.990
	SRR5643524	five period of Gastrodia elata	7.000
	SRR5643525	five period of Gastrodia elata	5.040
	SRR5643528	five period of Gastrodia elata	6.060
	SRR5643658	five period of Gastrodia elata	4.240
	SRR5643659	five period of Gastrodia elata	9.140
	SRR5643660	five period of Gastrodia elata	7.390
	SRR5643661	five period of Gastrodia elata	7.980
	SRR5643662	five period of Gastrodia elata	6.940
	SRR5643663	five period of Gastrodia elata	8.610
	SRR5643664	five period of Gastrodia elata	6.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.890
SRP279888	Gastro	Gastrodia elata tuber	4.89
	Juven	Juvenile tuber	9.19
	Mother_Gastro	Mother tuber of Gastrodia elata	6.88
	Mother_Juven	Mother tuber of Juvenile	8.81