Gene detail

Detail information of GWHGAAEX009318/evm.TU.scaffold_242.17

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|695015813\|ref\|XP_009394795.1\|	PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SA60\|PPR6_ARATH	Pentatricopeptide repeat-containing protein At1g03100, mitochondrial (Precursor)
trEMBL	tr\|M0SKL8\|M0SKL8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P03010_001}
TAIR	AT1G03100	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	282701	295162	+

Transcript Sequence
>GWHTAAEX009318 ACATGCTATTTTAATAACTTTTCACCCGTCATTCAACCAAATAGTCCCTTAATGAAATCTCATGCTGACAATCACACTTTTATTTGCTGTTTGGTGGTGGCTGTTTGGATTTTATAAGACTTGTTATAAAATGAATTATAGAACATGATTAAATGTCAATACTAAAATAGAATAAAATGAAATCTTTGCTTTTGATAGTATTTTTGAGATTGAAATTGCTGCTGTGATAAAGATGGATTCAGAGGCTGTTTGGCTACTGTTTGCATTTTATAAAATCTTGCTATAAAATGATTTATAGAGCATGATTAAATGCTAATATTAAAATAGTATAAAATGAATTTTTTATGTGGTTTCTATCTGCATTTTTATATTATTTTATACCAAATCTTGTGTTAAGTTGGCATCTTGTAGTAGATGATGAACTGATCAACAAGTACCAGCATTTGTTCCTTTATTTTTTAACTTGATAGAGTAATTTACTTTTTCTGGGAACATGGGAGAGACGGTGTTTTCCTTGTGCTTGACAAGATCTCATAAAAATGATAGTTAAATGAAAGATAAATTCGTGCTATCACAAACACATAATTTATAGGTTCAAGTATTTTTATTTATTACAATAATCAAGGAGAGGAATAAGATATTCTAAGATGAATATCTCTTATGGACACAAATTTGTATACCTAACAACTTCGTATTGTATTAATTGATGCAAATAGTATCCTTGTACCTAACAACTTCTTATTGTGTGTTATGATATCATTTTGTTATCTTTTTTCTTATTTGATTTTGTTATGGAAGCTCATTAGTAATCACCTTGACATTAGAGTTTATACATCTTTTTGTGCTATGATATCATCTCTTGAAGTTCTGAGTTCTTATTTCACTATGTTTGAAGTTGGAATTTATATCGCTGCTTTAGCAAAAGCATTCTTTTACCCTCTCAAATAGTTGGAACTTTCCATGATGGTATGTGCTGTGATTGCAATGAGGACATCCTTGGCTGCTTGCAGCAACAGTGCAAGTTTCAAAGAATGGAAAATCAACAGAGCCCCTGCTTTAAATCACAAATAAAGTAGAAAAGTTTCTTTGCGATGAACAAAAATGTATTCCATCAGAAAATCTGTTTTTCAAATTTCTCCATGCGTGATGCCTCCCTTGTTGCCTTTTCTATTTCATAACCTTTTTTGTGAGGCTAGCTGCATTCAGCTGGAACATCTGAAGCTTGTACCTTGCAAGAATCTCATGGTATTTCCTTATGGCTCCAGAGAAGCTGTTGTCGGCAAGTTTGAACAATTCCAAAACTATTTTTCCACTACAGCTGAGCCAATATTAGTCCAAGCTCGTGATTCCTCTCGGCTCTCCTTACTTATTATAAATGCAATTGAAGAAAAACGATTTGAAGATGCTTGGAAGGAATATGAGAAGCATGTGCATATGGATGGCTTCCCTAGGAAATCAATTTTAAACAAGCTCATTACGGGCCTCACTGAGAGTTGTGAAGCCTGTTGGCTTGAAAAAGCTTTTAATACAGTAGATCTTGTCATTTGTGAGAAGAAGCATGATCTTTTGGATAAAGAAACTCTCCTTTTTCTTTCATTCATTCTTGCTAGATGCCAAGAACCCATTCTTGCAACAAATGTCTTACGAAAATTGGTTCAAATTGAACAATATCCTCCTGTTGCTGCGTGGTCTGCTATCATAGGACATCTGTGCCAAACTACAAATGGCACCTTTCTTGCTGCTGAGCTGATTTTGGAGATTGGTTTTCTTTTTAAAGACAATAGGGTTGATCCTAGGAAGAAGAGCAACAAGCTGTTATTAGCAATGAAGCCAAACTCCTTTGTTTTTAATTTAGCAATAACTGGATGCATATTACATAGGGTTACAAGAAAAGGCTACGAGCTTCTTGAACTAATGCCTCGAGTTGGGGTGAAGGCTGATGCTAGTTTGTTGATTGTAATGGCTCATGTTTATGAGAAAAATGGGTTGAAGGATGAATTACTTCATTTGAGAAGGCATATTGATGAGGCGTGTGGGCTCAATGACTTGCAATTTCAGCAGTTTTATAACTGCATATTGTCTTGCCATTTGAAATTTGGTGACTTGGACTCTGCAACCGATTTGATTTTGGATATGCTCAAAAGAGGAAGCGAAGCAAGACGTTCTCTGGCGGCTGCCAAATCAGTACTCGAAACTGTTGAAGCTGGAAAGAAAAATTATAGTCTTCATAATTCTGAAACTGGTGAGCTTAAGTATACTGGTGAGTTTGTTCCGCTTAAAAGTCAAGCTCTGACTTACACTGAGTTTACAAAAGATAAACGTTTTTCAAGGCTAGAAACTGAGGCGAGGGAATCACTGTGTTTGTTATCAGAAATGTTGAATGCTCATGTTGAACTGGTTTGTTCCAAAGATGGCATTCTCCATCCAACTGAGAAAGTCTATGCCAAACTTGTGCGAGGGTTCCTGGAACTAAATAGGATTAGTGATTTAGCTGCGTTTCTTTTCAAAGCTAGTAAAGAGGATTCACCAGTCTCTGTAGACAACTCGATTGTTGTTCAGGTGATAAATGCATGCATTTCTATGGATTTTTTGGAGCAAGCACATGACCTTCTGGATGAAATGAGATTTTCCGGAGTTAAAGTTGGCTCGTTTATCTATTCATCCCTTTTAAAGGCATATTGTAAGAAGAATTGTCAAGCAGAGATCGATGCACTCTTAAGAGATATTCGGAAGGCCGGCATTCAGCTTGATTCAAGCTGTTATGAGTCTCTAATACAATCTAGAGCATTTCAAAATGATTCAAGTGGAGCTCTTTTCTTGTTTAAAGAGATGAAAGCGTCTAACATATCAAGATCTGCGAACAATGAATTTAAGAAGTTGGTAGAAGGTTGCTCTGGGAGTGGTGAGGTTGGTCTGATGTCTAAGCTTTTAGAAGAAATCAAATTCAGCCAAAAGGTGGATTATGGCGTTCATGATTGGAACAATGTGATACATTTCTTTTGCAGGAAAAAGATGATGCATGATGCCAAAAAAGCTTTGAGCAAAATGAGGGCTTTGGGATACATTCCTAGTGCCCATACATTTCACTCACTGGTCACTGGCTATGCTGCCGTAGGAGGCAAGTATGTTGAAGTTGCAGATCTATGGGGAGAAATGAAAGTGGTTGTGAGCTCTAGCTCGATGAAGTTTGATCAAGAACTGTTAGATTCCTTCTTGTACTGCTTTGTGAGAGGTGGCTTTTTTCTTCGGGCCATGGAGGTCATCGAGATAATGGAGGCAGAGAAAATGTTCATTGATAAGTTCAAATATAGGTCACTTTGGCTCAAGTATCACAGGACTTTATACAAAGGAAAAGCACCTAAAATTCAAACTGAGGCTCAATATAAGAGGAGAGAAGCAGGCTTGGGTTTCAAGAAATGGATAGGGTTGACCTGATGTATGATAGTGGGACACCTTATGTCACTTTTCTGCCTTGGATCTCCTCATTATGCATAATGAGCTGTTGTTAAATAGGAGCTTGAAGAGGCTGCCATTCTTCTGGAACTCGTAAACCACAAGCTTCTCCTGCTTGGAGCAATAGAAAGCGGCGACAGGGAGAACATTGGGATGGCTGGCCTGATCCAAGCACATTATCTTCCTCTGAAACTGCTCCCCTGTGATCGTCCAGTCCTTGATCCTCTTAACAGCCAGGTCGGTCTCCTCATCCAAAATGACTCTGTACAAGCTCCCGAACCTTCCCTTCCCCATGAGCTCTGCCGGCGCCCGAAGGAGATCGTCAAAGCTCAGCTCTTTTCTGATCCTGTCCCTCCTCAGCACCACCAGAGACCCCGGCGAAGCCTTCCCTGCCTTCGCTGCTGGCGCAGACGAAATCGAGTACTCTGACCGTGACCCCTTCTCGCAGCTGTTGCTGTCCAACCCCTTTTTCCCCGTGCTCGGCTCTCCTTCTGCCTGAGGCGAGGGAAGAGGGCTCACTTCCGTTCCCTTCTTCCTCCGAATGTATGCGAACACGGCGAACAGAATCACGGCTGCGCCAAACAAAACGTAGCCCAAGAACGTGATGATCTTGAGCGCAAGCTTTTTGGCTGAGTTTGAATCGTTGCCGCTGGGATCCATGGAGGGAGACTGCAGATGGTCGGGGCACTGGACCCCGAGCGGCGTCCCGCAAAGCCCGGGATTTCCTTGGAAGCTGGAAAGGGGGAATTTTTCGGAGTTGGGCGGGAGGGGGCCGTAGAACTGGTTGAAGGAGATGTTGAACTGGTCGAAATAGTTGAGGTCAAAATGGGAGATTTTGCCGGTGAAGTGGTTGCCGTCGGCACGGAAGGATACGAGGCCGGAGATGCTGGTGAGGTTCTGCGGGAGCTCGCCATAGAAGTTGTTGTAGGAGATGTCGAGCCTCTTCAGGTTCTTGAGGCTTGGGAGGGACGAGGGAATAGTTCCGGACAGGCTGTTGTTGCCCAGATAGAGGGTAGCCAGCTTGGTGCAGCTTCCGATCTCCGGGGGGAGGTCGCCGGTGAGGGAATTGGAGGCCAGGCTCAGAAAGGTGAGGGAGCTTGATGAGCATATGGTGAAGAGGAGGCCGGCGTCGATGGACCCCGAGAGGCCCAGCGAGTCCAGCGTGATGGACCGCAGGGTTCGGCCCGCACTGTTGCAGTTGATTCCCTTCCACGAAGACCGTCGGCAGGGGTCCATACTCTCGTTCCACCCCATGGCTTGGGCGATGCGCTGGTTCTCAGGCGACAGCTTCTGCAGGAAATTGATCAATGGGAGCTTTATGCTGCTCAGATTTTGCGATTCTGCACCGTTGCTGAGGATGATTATCAGAAGAAGATGGGAGATGAGGAGCCTCCTCATTTGGCTTCAGAATGAGAGAGCCACACACAGAGAGAGAGAGAGAGAGAGGGGGGGATGATTATTGTGTTGGAGGGAAAATGGAAAGTCGGTGGAGGGAAGAGTCAAATCGGGGGGAAGGGAAAGGAGTTTTAGAGAAGCAGAATTACATATGGCTTCGGGAAGGCAGCTAGGTGAGGAGGCTACTGAAAGAAAGCAGGACGCGGTGCCCAAATGTTGTGAATTTTGAATATTTAAATTCCGAGATTCAGGAAACGGTCAAATTCATTGCTTGTGAATTCCTCCTCAGGTTATCAATTTTTGCTTTACCGGCTTTGCTCTTTAAATTGAAGTGCTATTTTTGCCAAAAAAAAATCAGATTATATCGATTTATATTAATTAAATCTTTCTGAAGTTCA

Network for GWHGAAEX009318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	322	349	0.0069
PF01535.19	PPR	487	512	0.24
PF01535.19	PPR	626	653	0.011

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.320
SRP064423	SRR2545915	Juvenile tuber	13.520
SRP108465	SRR5643513	five period of Gastrodia elata	10.770
	SRR5643514	five period of Gastrodia elata	11.920
	SRR5643515	five period of Gastrodia elata	10.400
	SRR5643524	five period of Gastrodia elata	11.570
	SRR5643525	five period of Gastrodia elata	13.600
	SRR5643528	five period of Gastrodia elata	7.630
	SRR5643658	five period of Gastrodia elata	15.050
	SRR5643659	five period of Gastrodia elata	18.110
	SRR5643660	five period of Gastrodia elata	20.450
	SRR5643661	five period of Gastrodia elata	15.830
	SRR5643662	five period of Gastrodia elata	13.680
	SRR5643663	five period of Gastrodia elata	22.580
	SRR5643664	five period of Gastrodia elata	16.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.660
SRP279888	Gastro	Gastrodia elata tuber	28.21
	Juven	Juvenile tuber	39.86
	Mother_Gastro	Mother tuber of Gastrodia elata	25.16
	Mother_Juven	Mother tuber of Juvenile	41.65