Gene detail

Detail information of GWHGAAEX009320/evm.TU.scaffold_242.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	5.00E-14	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|743902009\|ref\|XP_011044334.1\|	6.40E-157	PREDICTED: probable inactive receptor kinase At2g26730 [Populus euphratica]
Swissprot	tr\|O48788\|Y2267_ARATH	6.00E-100	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|A0A061G0X7\|A0A061G0X7_THECC	3.00E-155	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY20659.1}
TAIR	AT2G26730	2.00E-99	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	292802	294767	-

Transcript Sequence
>GWHTAAEX009320 ATGAGGAGGCTCCTCATCTCCCATCTTCTTCTGATAATCATCCTCAGCAACGGTGCAGAATCGCAAAATCTGAGCAGCATAAAGCTCCCATTGATCAATTTCCTGCAGAAGCTGTCGCCTGAGAACCAGCGCATCGCCCAAGCCATGGGGTGGAACGAGAGTATGGACCCCTGCCGACGGTCTTCGTGGAAGGGAATCAACTGCAACAGTGCGGGCCGAACCCTGCGGTCCATCACGCTGGACTCGCTGGGCCTCTCGGGGTCCATCGACGCCGGCCTCCTCTTCACCATATGCTCATCAAGCTCCCTCACCTTTCTGAGCCTGGCCTCCAATTCCCTCACCGGCGACCTCCCCCCGGAGATCGGAAGCTGCACCAAGCTGGCTACCCTCTATCTGGGCAACAACAGCCTGTCCGGAACTATTCCCTCGTCCCTCCCAAGCCTCAAGAACCTGAAGAGGCTCGACATCTCCTACAACAACTTCTATGGCGAGCTCCCGCAGAACCTCACCAGCATCTCCGGCCTCGTATCCTTCCGTGCCGACGGCAACCACTTCACCGGCAAAATCTCCCATTTTGACCTCAACTATTTCGACCAGTTCAACATCTCCTTCAACCAGTTCTACGGCCCCCTCCCGCCCAACTCCGAAAAATTCCCCCTTTCCAGCTTCCAAGGAAATCCCGGGCTTTGCGGGACGCCGCTCGGGGTCCAGTGCCCCGACCATCTGCAGTCTCCCTCCATGGATCCCAGCGGCAACGATTCAAACTCAGCCAAAAAGCTTGCGCTCAAGATCATCACGTTCTTGGGCTACGTTTTGTTTGGCGCAGCCGTGATTCTGTTCGCCGTGTTCGCATACATTCGGAGGAAGAAGGGAACGGAAGTGAGCCCTCTTCCCTCGCCTCAGGCAGAAGGAGAGCCGAGCACGGGGAAAAAGGGGTTGGACAGCAACAGCTGCGAGAAGGGGTCACGGTCAGAGTACTCGATTTCGTCTGCGCCAGCAGCGAAGGCAGGGAAGGCTTCGCCGGGGTCTCTGGTGGTGCTGAGGAGGGACAGGATCAGAAAAGAGCTGAGCTTTGACGATCTCCTTCGGGCGCCGGCAGAGCTCATGGGGAAGGGAAGGTTCGGGAGCTTGTACAGAGTCATTTTGGATGAGGAGACCGACCTGGCTGTTAAGAGGATCAAGGACTGGACGATCACAGGGGAGCAGTTTCAGAGGAAGATAATGTGCTTGGATCAGGCCAGCCATCCCAATGTTCTCCCTGTCGCCGCTTTCTATTGCTCCAAGCAGGAGAAGCTTGTGGTTTACGAGTTCCAGAAGAATGGCAGCCTCTTCAAGCTCCTGCACAAAGGGCAGCATTTGAGATGGGCGAGGCGTCTAGACATTGCGGCAGGAGTGTCTTCGGGTCTGGCATATATGCATGAAACAGTTGAGATGTGGCACGGGAACTTGAAATCGTCGAACATCCTCTTCTCCTCTTGTGCGGATGAGCCTCTGATCAGCGAGTATGGCCTCACTGCCCTCCCAACGCAGCGGCCGGAATCCAGCAATAGCACAACGACGCACTTCACCCCAGCCTCGGATGTGCACGCCTTCGGCATCATCCTCCTTGAGCTCCTCACCGGAAAGCCCAGCCAGGGCTTCGACCTCCCACGATGGGTCATCTCCATCGTCAAGGAGGAATGGACGGCCGAGGTTTTCGACAAGGCCCTTCTCGCCCAATCCGATGCTCACGAGGACGCCATGATCACACTGCTCCAGCTCGCCTTGCGCTGCGTCGATACCTCTCGCCGCACCACCATGCCTGATATCGCCGCCAAAATTTACCGAATCAAGGGCTACACCTCCCAATCCCCCTCCAACCAGTAA

Network for GWHGAAEX009320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	367	604	3.50E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.630
SRP064423	SRR2545915	Juvenile tuber	4.460
SRP108465	SRR5643513	five period of Gastrodia elata	28.930
	SRR5643514	five period of Gastrodia elata	35.610
	SRR5643515	five period of Gastrodia elata	29.940
	SRR5643524	five period of Gastrodia elata	27.530
	SRR5643525	five period of Gastrodia elata	1.980
	SRR5643528	five period of Gastrodia elata	0.620
	SRR5643658	five period of Gastrodia elata	2.190
	SRR5643659	five period of Gastrodia elata	3.580
	SRR5643660	five period of Gastrodia elata	6.400
	SRR5643661	five period of Gastrodia elata	5.380
	SRR5643662	five period of Gastrodia elata	3.790
	SRR5643663	five period of Gastrodia elata	6.720
	SRR5643664	five period of Gastrodia elata	6.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	74.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	100.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	100.310
SRP279888	Gastro	Gastrodia elata tuber	25.67
	Juven	Juvenile tuber	12.29
	Mother_Gastro	Mother tuber of Gastrodia elata	97.02
	Mother_Juven	Mother tuber of Juvenile	54.02