Gene detail

Detail information of GWHGAAEX009323/evm.TU.scaffold_242.24

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	3.00E-60	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672140190\|ref\|XP_008793900.1\|	0	PREDICTED: probable E3 ubiquitin-protein ligase HIP1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q7XTV7\|HIP1_ORYSJ	1.00E-90	Probable E3 ubiquitin-protein ligase HIP1
trEMBL	tr\|F6H1B8\|F6H1B8_VITVI	9.00E-135	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45827.1}
TAIR	AT4G34040	3.00E-60	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	390004	443013	+

Transcript Sequence
>GWHTAAEX009323 CATAGCCAATGTGCAAGGAGGAAAAGAGAGCATATTTAGTCCAGTATTCTCCTATACCTCTCGGACTTGCCCTCTCGTTTTTTATTTCTACCGTCCTCCCTGGCTGCCCTCTGAGCTTTTGGTTTTCGTCGTTTCCCCCCAGCAACGGGGAGACGAAGAAGTCTTTTTCAAGCCATTTTGATAAAGGGGTTCATCGCATCCATCTTATTATCAGATCTGCGGTGGCTGTAAGGACGTACATTAATAAGAACTTCTAGTGTCAGAGGCTTTATAAATTTTGTTTCTACATAATCTTTCTTTGTGGAAATTCAATCAGGCCTACTTTTTTAGATGCAAGGACAAAGAAATTCTATCGAATCAATTTCCGAGCCCTTTCAAATTGACTGTGGATCTAATTCAAATAGTTCTGGCATGGATCAACCATTTTATGGTGGTAACATGCTTATAAATTCTGCGGAGACCCCTATTTTGGCAGATTATTTATTATCTCCCAATGTTACAGACATGGATTATTTGAATATGGCCCCTCGAGAAATTGATGGTTTGAATATTTGGAATTCACGTGACTCTACCTCTAGCTCTTATATAGCAAGCCGAGAAAATCATGATGTTACTAAAATGGATCATGGTTGGAATACTACCCTTTCTATTAATTCTGCTGGTGGCCCAAGATTGGAAGAAAGACATTGTGAAAGAAATAACATTCTTTCATTGGAAAATGTGGACTTAAATCTTAATAATACTCCTGCTGATGATGGCCAGACATTTTCACAAAGGCTGAATTCAAGTCATGTGAGCCAAAGAATGGAGCGCAATGTGCATTCAGGTTCTCATAGCGAGGTTGTGGAAGTATCACTATGCCCTTTTTTGCCAGAATTTTTTGAACCTGAGCAAGCTTCTCATACAAATCCTAATGGAAGTTCTTCTAGTGGTGTTCGACAGGTCTCAGGGGATGATGATAGAACAAGAAGTTCAGTTGATGGATTACGCTTAGCTTGTAAGAGGAAAAATTTGGAAGGAACTGGTGGAGAGTCTTCGACTAGTCATAATAGTTCTACAGAAATGAGCATTCCAAGCTCATCCAGGTATTTGCCTACACCCAGTTTCTTAGAAATGAATCAGAGTTCAAGTTTCAGCCCCATGCATAGAGGACATTATTCTGAATGGAATCCAACATCATTCATATCTGGAAATGCTGAATCCTCGCAGAGGAATTTGCGGGCAAGACTTAATTCTGCATCCCAGCATGATATATCCCCTTATCAATCGCATTCTGCTGTATCCAGTGACAGGCTCTCTAGCATCTGGTCATCTGGTGATCTCTCTTCTATTTCAAATCCTTTTAATCACTCAACAGAACAAAGCCAGCCTCACACATCACTTGTTCCTGGTTTGCCTCACAATGTTAACAATTCTTCTTCTAGTTCAAGAATTGGTGGTGCTTCCCTACCATCCTATCCACAGCAGAGATTTATTGCATCTCCAGAGGAAGCAAATATGAGAAGCTTGCCAAGAAATGCAATTGTTGATCCGTCAACATTTCTGACAAGAAATACAGCCAGTCATCTGGGTGAGGATCCACCAAACTGGAATTCCTCAAGTACTAGCTTGAGTATGTCAGGGAATAGAGCTAGCAGTAGCTCTGGTGTCATTCCACTACCGGGATCAATTAGGACACCAAGTGAGATGGTTCCTGCACAGTACCACAGAAACTTATCTGAGGTTTTACGCAGCTCATTGTTTCAATCTGGTGGATCTGAATCTGGACATCAGAATAGTAATCTAAATTCACGGCAGTCTGGTCGTTCTGCTTCAATGCAGGAAACTGGTCAATCATCTAGAACTTTGCGCGAAGGCCTTTTTCCACTGTATCCAAGAACTGCAGTTCCTATAGACCGGCAACGTGATGGTGTTTCAGGCATACCTTTCTCTGCCAGAAGCAGAGATGGAAGAAGTAGGATGATATCTGAGCAGATTCGCAATGCATTGGATTTAATGCGTAGAGGGGTGAGTCTGCGATTTGAGGATGTCTTCATTTTCGACCAGTCTGGAATTTTTGCTCGTGCTGACTTGTATGATAGGCACAGAGACATGAGGCTCGATGTCGACAACATGTCTTATGAGGAATTATTGGCGCTGGAAGAGAGGATCGGCTATGTGAACACAGGGCTCAGCGAAGAAACCATTTTGAAGTGCCTAAAGCAGCGAAAATATTCTCTTTGCAATAGGCAACAAGCAGCAGCAGCAGAAGAGGAGCCTTGCTGCATATGTAGGGAAGATTACAATGAAGGAGAGGATATTGGGAGTCTGGAGTGCAGGCATGATTTCCACAGCGCCTGCATAAAGCAATGGCTAATGATCAAGAACTTGTGTCCCATCTGCAAAACAGCAGCTCTAGTTGTCAAATGAAGCCAAGCAAAGCAAGCAAGCAAGCAAGGAATTGTTTCTTTCTGGATGACGAGTGAGTGATCCTTCTCTCTTCCTCTCTCTCTTTCTCTCTTTTTGAGATGATATTTAATTTATTAATAACGCTTGCTTTTATATTTATTTTTTTAATTTGACCGATGAAGCAAACTATTTTCCTTTCCACCCAAATTTCACCTTTTTTTTGAGCATGTTCAAAATTCAACTCTGGCCTACCAATGTGAAATACAAGCTCTTAATTTTTACTATACATCCGTCTCTTGATTGGTTTGGTTTGGTTGCCTGAAATGGAAAATTTGCTGTGATGTCTCTGCATGAGAAATCTTAATTTTAT

Network for GWHGAAEX009323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	644	685	1.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.830
SRP064423	SRR2545915	Juvenile tuber	45.740
SRP108465	SRR5643513	five period of Gastrodia elata	28.250
	SRR5643514	five period of Gastrodia elata	26.710
	SRR5643515	five period of Gastrodia elata	26.320
	SRR5643524	five period of Gastrodia elata	25.040
	SRR5643525	five period of Gastrodia elata	23.530
	SRR5643528	five period of Gastrodia elata	27.240
	SRR5643658	five period of Gastrodia elata	28.490
	SRR5643659	five period of Gastrodia elata	23.270
	SRR5643660	five period of Gastrodia elata	23.850
	SRR5643661	five period of Gastrodia elata	20.810
	SRR5643662	five period of Gastrodia elata	23.800
	SRR5643663	five period of Gastrodia elata	24.900
	SRR5643664	five period of Gastrodia elata	24.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.860
SRP279888	Gastro	Gastrodia elata tuber	26.91
	Juven	Juvenile tuber	42.15
	Mother_Gastro	Mother tuber of Gastrodia elata	29.25
	Mother_Juven	Mother tuber of Juvenile	52.03