Detail information of GWHGAAEX009325/evm.TU.scaffold_242.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34149.00E-102Component of the U4/U6.U5 snRNP/mitosis protein DIM1
nrgi|685379448|ref|XP_009122442.1|2.07E-101PREDICTED: thioredoxin-like protein YLS8 [Brassica rapa]
Swissprottr|Q9FE62|YLS8_ARATH3.00E-102Thioredoxin-like protein YLS8
trEMBLtr|M4CYN8|M4CYN8_BRARP8.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra009335.1-P}
TAIRAT5G082909.00E-102mRNA splicing factor, thioredoxin-like U5 snRNP

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000239523938538522-
Transcript Sequence

Network for GWHGAAEX009325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02966.15DIM141361.00E-66
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12859TXNL4A, DIB1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms64.060
SRR2545915Juvenile tuber76.490
SRP108465SRR5643513five period of Gastrodia elata182.430
SRR5643514five period of Gastrodia elata264.960
SRR5643515five period of Gastrodia elata186.180
SRR5643524five period of Gastrodia elata235.540
SRR5643525five period of Gastrodia elata221.410
SRR5643528five period of Gastrodia elata162.600
SRR5643658five period of Gastrodia elata90.380
SRR5643659five period of Gastrodia elata101.280
SRR5643660five period of Gastrodia elata95.930
SRR5643661five period of Gastrodia elata108.450
SRR5643662five period of Gastrodia elata93.020
SRR5643663five period of Gastrodia elata103.140
SRR5643664five period of Gastrodia elata94.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1149.500
SRR6049655Rhizomagastrodiae_C368-T10_good_1142.260
SRR6049656Rhizomagastrodiae_C368-T07_good_1170.920
SRR6049657Rhizomagastrodiae_C368-T07_good_1110.860
SRR6049658Rhizomagastrodiae_C368-T04_good_198.290
SRR6049659Rhizomagastrodiae_C368-T04_good_199.790
SRR6049660Rhizomagastrodiae_C368-T01_good_1110.410
SRR6049661Rhizomagastrodiae_C368-T04_good_199.940
SRR6049662Rhizomagastrodiae_C368-T01_good_1178.060
SRR6049663Rhizomagastrodiae_C368-T01_good_1171.790
SRR6049664Rhizomagastrodiae_C368-T10_good_1251.660
SRR6049665Rhizomagastrodiae_C368-T10_good_1251.660
SRP279888GastroGastrodia elata tuber 180.43
JuvenJuvenile tuber342.71
Mother_GastroMother tuber of Gastrodia elata 114.65
Mother_JuvenMother tuber of Juvenile 146.65