Gene detail

Detail information of GWHGAAEX009326/evm.TU.scaffold_242.27

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672158569\|ref\|XP_008799029.1\|	PREDICTED: probable methyltransferase PMT9 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q8VZV7\|PMT9_ARATH	Probable methyltransferase PMT9
trEMBL	tr\|M0TJC0\|M0TJC0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P20830_001}
TAIR	AT5G14430	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	581651	618203	-

Transcript Sequence
>GWHTAAEX009326 ATGAAGTACATGCCGTTGCAGAGGAGGGAGCCTCTATTGAGCTGCCGGCTATTCTCCTACCTTCTCATCACAGCCATCATAGCCGTCCCCTTCCTTGTCTTCTACTATGGTGCTTCCCTCACCCCCGGCCTTCGCCTCACCGACGATTCCGCCCACGGCTCCGACCCCTTCTTCCGCCCCCTCATCCACTCTTCCGTTGAGTTATCCGCCGATTCTTCTTCCTATTCTCATTACCTCAACTCTTTCCCGGTATGCGACCAGAGATTTTCCGAGCTGATCCCGTGCATGAATCGCAACCTTATCTATCAGCTCAGGCTCAAGCTGAATCTATCGGTAATGGAGCACTACGAGCGCCACTGCCCTCCCCGCATTCGCCACTTCAATTGTCTTATCCCTCCGCCTCCTGGTTACAAGATTCCTATAAGATGGCCTAATAGTCGGGATGAGGTTTGGAAAGTGAATATACCGCACACCCATCTTGCATTCGAGAAGTCCGACCAGCACTGGATGGTTGTTCGTGGTGACAAGATCACTTTTCCCGGCGGTGGAACTCATTTTCACACTGGCGCTGACAAGTATATCGCTCACCTCGCGCAGGTATTCCTCAGCAATGGGGGGAATATTCGCACCGTCCTTGATGTGGGTTGTGGTGTTGCGAGTTTTGGAGCCTACCTGTCACCTCTTGACATCATTGCTATGTCTCTTGCTCCAAATGATGTGCATGAAAACCAGATTCAGTTTGCTCTTGAGAGGGGGATACCCTCAACACTCGGTGTTTTAGGAATAATGCGTCAACCGTACCCAAGTAGGTCTTTTGACTTGGCTCATTGCTCACGATGTAGGATCGATTGGCTTCAGCGAAATGGGATACTGCTGTTGGAGATAGATAGGGTTCTTAGACCTGGGGGTTATTTTGTTTACTCTTCACCTGAGGCTTATGCACATGATGAGAAGAACCAGAGGATATGGCATGCCATGAGTGATCTTGTACAAAAAATGTGTTGGAAAATAGCTTCCAAGAAGAATCAGACAGTAATTTGGGTTAAGCCATTGCATAATGGATGCTTTTTTAGAAGAGATCCAGGCGTACAACCCCCTTTGTGTAGCTCTGAAGATGATCCTGATGCCATTTGGAATGTTCCCATGAAGGCTTGCATCTTGCCCTACACCAAGAGGGTGAATAGGGCAAAGGGCAGTGAACTAATTCCATGGCCTCAGCGGCTAACATCGCCACCACCTCGTTTGGAAGAACTTGGTATCTCCTCTGAAAAATATCACGAGGATAATGAGATATGGCATTTGAGAGTGATTGAGTATTGGAAACATTTGGATTCTGTGATTGAGAAGAATTCCATAAGAAATGTAATGGATATGGGAGCCAACCTTGGTGGTTTCGGTGCTGCTCTTGCAGATAGAGATGTGTGGGTTATGAATGTTGTTGCTGTGAATGAAGCAGGGAAATTGAAGATCATTTATGATCGGGGTTTAATTGGAGTGGTCCATGACTGGTGCGAGTCTTTCTCGACGTACCCCCGTACGTACGACCTGCTTCACGCGTGGTCTGTGCTGTCGGGAATAGAGCAGCGAGGGTGCAGTCTGGAAGACCTCCTCATTGAGATGGATCGAATTCTACGCCCGCACGGCCTCCTCATCATCAGAGATGCCGACCCCACCGTAAACTACGTTCGTCGATATCTCCGGGCTTTGAGATGGGATGCTTGGTCCTTTCAAACCCGCCCGGAAATAGACGCCCTCTCCAATGCCCCAGACACCCTTCTCTTTGCCAGAAAGAGCCTTTTCCATTCCTTTTGA

Network for GWHGAAEX009326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	91	582	9.50E-216

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.170
SRP064423	SRR2545915	Juvenile tuber	47.830
SRP108465	SRR5643513	five period of Gastrodia elata	31.670
	SRR5643514	five period of Gastrodia elata	26.930
	SRR5643515	five period of Gastrodia elata	26.780
	SRR5643524	five period of Gastrodia elata	27.280
	SRR5643525	five period of Gastrodia elata	40.660
	SRR5643528	five period of Gastrodia elata	37.280
	SRR5643658	five period of Gastrodia elata	53.280
	SRR5643659	five period of Gastrodia elata	32.560
	SRR5643660	five period of Gastrodia elata	31.810
	SRR5643661	five period of Gastrodia elata	31.290
	SRR5643662	five period of Gastrodia elata	28.670
	SRR5643663	five period of Gastrodia elata	38.500
	SRR5643664	five period of Gastrodia elata	36.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	72.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	73.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	85.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	70.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	67.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.190
SRP279888	Gastro	Gastrodia elata tuber	48.38
	Juven	Juvenile tuber	59.06
	Mother_Gastro	Mother tuber of Gastrodia elata	39.32
	Mother_Juven	Mother tuber of Juvenile	44.24