Gene detail

Detail information of GWHGAAEX009327/evm.TU.scaffold_242.28

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0804	1.00E-162	Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein)
nr	gi\|672140218\|ref\|XP_008793914.1\|	0	PREDICTED: BRCA1-associated protein isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0U9V8\|M0U9V8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP16990_001}
TAIR	AT2G42160	1.00E-162	zinc finger (ubiquitin-hydrolase) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000239	632529	654493	-

Transcript Sequence
>GWHTAAEX009327 GTCAAAATGATATGGCGCGCGGGGATAGGGTGGATGCGAGTGAGTGCGTGGCAGCATGGGTTGGGATGCTCGACAGTGACTCGGATAGCACGGGGGCAAAATAAGGGGCCGGGCGTGTGAGGCGCTGCCAGGCTCAGGGGCTGCGCCGCGTTTGTATGTTTATCCAATCCCGCGAGGAGTCCAGAAAAAAATTGATCCGATGTATTGTCTACGGATCCACTCGGCGGACGTGCCGGCTCATGTGGAGGAACGCTTCACTGGAGTAAGCCGCGCCAACTGGCCGCCTTTGGAATCCACCGGAGATGGAGACTCAACGTTGAAGAGCAGCACGCGAAGAAGTATCGCTAACCCTAGAATCGAAATCATCCGCGGAGTCGTTCACCTTTACCGCAGAACCCTACCACTATTCTCCTCTTCTTTTTCCACATTTTCGTCCTCCTCTTCGTTTCCTCACTCATCCGATTATTTCCTTCCGGCCGGTCGTGGGACGCTTCTCTTCGTTCTCGCTGTTCCTAATCATATCTCTCCTGAGGATTTTCTACGCTTTTGTGGCTCCTATGCGGACTTTTCATTAGGGATACTGGTCATTAGGAATGATGGGATGGAGGACCGTTTCAGCGTTCTGATCATATTAGACGATCAGAAGAGTGCTGATGCGTTCTATATCAATCTAAATGGGTGGAGGTTCTCTTCAGCCGAGGGGGAGATTTGCCACGTACTGTTCCTAGCTTCTGTGGAATACACCAAGTCTACAGAGATTGCTGGTACTCCTCCCGTTGGGTCCACCGAACTTCCAACTTGTCCCGTATGCATAGAAAGACTGGACCAGGAGATAACTGGCATAGTGTCTACTACCTGTGATCATTCTTTCCACTGCTCCTGCATATCAAAATGGGCCAATTCATCCTGTTTGGTGTGCCAGTTTTGTCAAGAACATTCTGTAAAGCCTATCTGCTCATTGTGTGATACATCAGAAAATCTCTGGATATGCATCATTTGTGGTTTTGTTGGATGCGGAAGATATAACGAAGGCCATGCATTTAGACATTGGAAAGATACTCAACACTGCTTTTCTCTTGATTTGAAAACACAAAGGGCTTGGGATTATGTCGGAGATAGCTATGTGCATCGAATTAATCAATCAAAGAGTGACGATGAGCTTAAAATGAAATCCAGCAGTAGATCTGCTGGGGATCGTTGTGAAAGCTGTGCATTCACTGAGACTTCTGGAATTAACGAAGCTTTGTTAAACAGCAAAGTTGAAGCGATTGTAGATGAGTACAATCGGTTACTTGCCAGTCAACTTGAAAATCAAAGAGTGTATTATGAAACTCTACTTGAAGATTCAAAAGAGAAAAGAGTACAATATATTTCTGAAGCTGTGGAGAGAGCCGTGGGTTCAAAAATTCACGACTTGCAACTCGAAATTGAAAACATTATAAAAGAAAAGGATAATATTGCTAATATAAATGAAAATCTCATGAAAAGTCAAAATTATTGGCGTCAGAAGGTCAATGAAATTGAACGAAGGGAGAGAGAAAGACTAGGATTGAAGGATCAAAAGATTTATGAACTGGAAGAAGAGATTAGAGATTTCACTGTTTTCATTGAGGCTCAGAAAGCGCTTGATATCAGAGGCGGGACCTTATTACCCGTTCCTTCACCACCGGTTTCCTCCACCAGATCCAAGAAATCTTCAAGGGTTTCTAGAAAAAGAAGTTAGCTTGAGGAATAATGTAGCATCACACGATTGCTTATTTTACTTGACATGAGTACCTGCATTAATTGATGTTGATTGCTGCCTTTCTTTTCTCTATTATTGCCGTCATCTGCAGAGATGCTTTCCGTTAAGGAAATTGCTTGACGTAGTAAATGCTCGAGGGAAAAAACTTGAAATTGTTACCAGTGGCTGCAGAACTGGATCAGGTAGCAGCTATATGGTTGTTGATTAAAATGTTGAAGCTAATTCAGAAAAACCGCTAAAGCTGGCGCAAATATTCCACAAACCTTTGTAGTTACTCGAGTTTGCCATCCTCAAAATTCTCTTTTTTTGTTGGGTTAATTTTGACTTGTGGAGCATATAAATGTTTAGAGGAAATAAGATGGTTAAAGTACAATTTGAATATGCTTACAAGTGTCTTCTAATGGATTGGCCTTTGGTGTTGGTACAGCTAAAGTACTATGAATATGCTAACAACTGTCTACTAATGGATTGGCCTTTGGTGTTAGTACAGTTAGAGTACTATTTGAATATGCTTACTAGTGTCCAAGCCTTCTCTTTATTAGTAGGCAGAACATGCCTCTTAAAAAATAGAAAATATATATGTTAGGATTTTTTTTTTT

Network for GWHGAAEX009327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07576.11	BRAP2	92	188	1.00E-29
PF02148.18	zf-UBP	252	312	1.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10632	BRAP	Ras signaling pathway	map04014

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	74.890
SRP064423	SRR2545915	Juvenile tuber	54.490
SRP108465	SRR5643513	five period of Gastrodia elata	32.690
	SRR5643514	five period of Gastrodia elata	25.430
	SRR5643515	five period of Gastrodia elata	26.020
	SRR5643524	five period of Gastrodia elata	25.390
	SRR5643525	five period of Gastrodia elata	40.990
	SRR5643528	five period of Gastrodia elata	35.180
	SRR5643658	five period of Gastrodia elata	44.220
	SRR5643659	five period of Gastrodia elata	33.920
	SRR5643660	five period of Gastrodia elata	44.550
	SRR5643661	five period of Gastrodia elata	34.830
	SRR5643662	five period of Gastrodia elata	39.970
	SRR5643663	five period of Gastrodia elata	39.880
	SRR5643664	five period of Gastrodia elata	48.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	69.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	76.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.700
SRP279888	Gastro	Gastrodia elata tuber	39.56
	Juven	Juvenile tuber	40.62
	Mother_Gastro	Mother tuber of Gastrodia elata	34.70
	Mother_Juven	Mother tuber of Juvenile	35.58