Detail information of GWHGAAEX009328/evm.TU.scaffold_242.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|331698915|ref|YP_004335154.1| | 1.00E-24 | serine/threonine protein kinase [Pseudonocardia dioxanivorans CB1190] |
| KOG | KOG1187 | 6.00E-151 | Serine/threonine protein kinase |
| nr | gi|672143964|ref|XP_008795870.1| | 0 | PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Phoenix dactylifera] |
| Swissprot | tr|Q9LSC2|Y3589_ARATH | 1.00E-151 | PTI1-like tyrosine-protein kinase At3g15890 |
| trEMBL | tr|A0A068TQ77|A0A068TQ77_COFCA | 0 | Coffea canephora |
| TAIR | AT1G52540 | 6.00E-151 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000239 | 693714 | 732399 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009328
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 43 | 310 | 2.80E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-XV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 106.940 |
| SRR2545915 | Juvenile tuber | 115.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.850 |
| SRR5643514 | five period of Gastrodia elata | 44.980 | |
| SRR5643515 | five period of Gastrodia elata | 45.680 | |
| SRR5643524 | five period of Gastrodia elata | 44.890 | |
| SRR5643525 | five period of Gastrodia elata | 78.500 | |
| SRR5643528 | five period of Gastrodia elata | 64.920 | |
| SRR5643658 | five period of Gastrodia elata | 86.560 | |
| SRR5643659 | five period of Gastrodia elata | 53.400 | |
| SRR5643660 | five period of Gastrodia elata | 61.980 | |
| SRR5643661 | five period of Gastrodia elata | 58.540 | |
| SRR5643662 | five period of Gastrodia elata | 73.670 | |
| SRR5643663 | five period of Gastrodia elata | 73.780 | |
| SRR5643664 | five period of Gastrodia elata | 80.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 69.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 61.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 63.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 83.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 97.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 74.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 81.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 71.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 51.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 51.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 68.43 |
| Juven | Juvenile tuber | 51.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.32 | |
| Mother_Juven | Mother tuber of Juvenile | 36.62 |