Detail information of GWHGAAEX009332/evm.TU.scaffold_243.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428777698|ref|YP_007169485.1| | 6.00E-37 | 50S ribosomal protein L15 [Halothece sp. PCC 7418] |
| KOG | KOG0846 | 1.00E-95 | Mitochondrial/chloroplast ribosomal protein L15/L10 |
| nr | gi|502120808|ref|XP_004497089.1| | 2.54E-100 | PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|P31165|RK15_PEA | 1.00E-99 | 50S ribosomal protein L15, chloroplastic (Precursor; Fragment) |
| trEMBL | tr|D7T943|D7T943_VITVI | 1.00E-100 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI27014.3} |
| TAIR | AT3G25920 | 1.00E-95 | ribosomal protein L15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000264 | 517042 | 519706 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009332
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00828.18 | Ribosomal_L27A | 98 | 225 | 7.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02876 | RP-L15, MRPL15, rplO | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.670 |
| SRR2545915 | Juvenile tuber | 29.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.680 |
| SRR5643514 | five period of Gastrodia elata | 39.540 | |
| SRR5643515 | five period of Gastrodia elata | 38.530 | |
| SRR5643524 | five period of Gastrodia elata | 37.840 | |
| SRR5643525 | five period of Gastrodia elata | 46.540 | |
| SRR5643528 | five period of Gastrodia elata | 39.350 | |
| SRR5643658 | five period of Gastrodia elata | 46.270 | |
| SRR5643659 | five period of Gastrodia elata | 44.210 | |
| SRR5643660 | five period of Gastrodia elata | 50.610 | |
| SRR5643661 | five period of Gastrodia elata | 51.760 | |
| SRR5643662 | five period of Gastrodia elata | 52.720 | |
| SRR5643663 | five period of Gastrodia elata | 49.540 | |
| SRR5643664 | five period of Gastrodia elata | 53.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.18 |
| Juven | Juvenile tuber | 45.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.27 | |
| Mother_Juven | Mother tuber of Juvenile | 28.48 |