Detail information of GWHGAAEX009337/evm.TU.scaffold_244.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|264680920|ref|YP_003280830.1| | 1.00E-20 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| KOG | KOG4442 | 3.00E-173 | Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis |
| nr | gi|695065937|ref|XP_009379841.1| | 0 | PREDICTED: histone-lysine N-methyltransferase ASHH1 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q84WW6|ASHH1_ARATH | 0 | Histone-lysine N-methyltransferase ASHH1 |
| trEMBL | tr|M0RIL6|M0RIL6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15910_001} |
| TAIR | AT1G76710 | 3.00E-173 | SET domain group 26 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000237 | 200265 | 256233 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009337
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00856.27 | SET | 270 | 376 | 5.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.400 |
| SRR2545915 | Juvenile tuber | 21.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.690 |
| SRR5643514 | five period of Gastrodia elata | 16.410 | |
| SRR5643515 | five period of Gastrodia elata | 14.490 | |
| SRR5643524 | five period of Gastrodia elata | 16.240 | |
| SRR5643525 | five period of Gastrodia elata | 15.840 | |
| SRR5643528 | five period of Gastrodia elata | 15.780 | |
| SRR5643658 | five period of Gastrodia elata | 17.320 | |
| SRR5643659 | five period of Gastrodia elata | 16.250 | |
| SRR5643660 | five period of Gastrodia elata | 17.210 | |
| SRR5643661 | five period of Gastrodia elata | 15.710 | |
| SRR5643662 | five period of Gastrodia elata | 16.720 | |
| SRR5643663 | five period of Gastrodia elata | 17.260 | |
| SRR5643664 | five period of Gastrodia elata | 21.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.81 |
| Juven | Juvenile tuber | 23.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.13 | |
| Mother_Juven | Mother tuber of Juvenile | 32.45 |