Detail information of GWHGAAEX009338/evm.TU.scaffold_244.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24243.00E-114Protein involved in transcription start site selection
nrgi|743817451|ref|XP_010930938.1|4.06E-124PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Elaeis guineensis]
trEMBLtr|D7T1F4|D7T1F4_VITVI6.00E-119Putative uncharacterized protein {ECO:0000313|EMBL:CBI24334.3}
TAIRAT1G738203.00E-114Ssu72-like family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000237310032336530+
Transcript Sequence

Network for GWHGAAEX009338

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04722.12Ssu7231933.40E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15544SSU72 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0006397Biological ProcessmRNA processing
GO:0004721Molecular Functionphosphoprotein phosphatase activity
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms47.840
SRR2545915Juvenile tuber40.990
SRP108465SRR5643513five period of Gastrodia elata46.360
SRR5643514five period of Gastrodia elata52.150
SRR5643515five period of Gastrodia elata45.280
SRR5643524five period of Gastrodia elata54.780
SRR5643525five period of Gastrodia elata29.280
SRR5643528five period of Gastrodia elata20.990
SRR5643658five period of Gastrodia elata18.080
SRR5643659five period of Gastrodia elata51.000
SRR5643660five period of Gastrodia elata51.140
SRR5643661five period of Gastrodia elata58.560
SRR5643662five period of Gastrodia elata52.170
SRR5643663five period of Gastrodia elata52.810
SRR5643664five period of Gastrodia elata51.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.400
SRR6049655Rhizomagastrodiae_C368-T10_good_137.920
SRR6049656Rhizomagastrodiae_C368-T07_good_147.500
SRR6049657Rhizomagastrodiae_C368-T07_good_141.450
SRR6049658Rhizomagastrodiae_C368-T04_good_126.880
SRR6049659Rhizomagastrodiae_C368-T04_good_129.690
SRR6049660Rhizomagastrodiae_C368-T01_good_137.060
SRR6049661Rhizomagastrodiae_C368-T04_good_132.930
SRR6049662Rhizomagastrodiae_C368-T01_good_146.760
SRR6049663Rhizomagastrodiae_C368-T01_good_137.410
SRR6049664Rhizomagastrodiae_C368-T10_good_149.720
SRR6049665Rhizomagastrodiae_C368-T10_good_149.720
SRP279888GastroGastrodia elata tuber 40.38
JuvenJuvenile tuber43.87
Mother_GastroMother tuber of Gastrodia elata 31.69
Mother_JuvenMother tuber of Juvenile 31.16