Detail information of GWHGAAEX009339/evm.TU.scaffold_244.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479149505|ref|YP_007779934.1| | 3.00E-23 | Serine/threonine protein kinase [Roseburia intestinalis XB6B4] |
| nr | gi|720087418|ref|XP_010244139.1| | 0 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8-like [Nelumbo nucifera] |
| Swissprot | tr|Q6R2J8|SRF8_ARATH | 0 | Protein STRUBBELIG-RECEPTOR FAMILY 8 (Precursor) |
| trEMBL | tr|A0A096RM61|A0A096RM61_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G103070_P01} |
| TAIR | AT1G53730 | 0 | STRUBBELIG-receptor family 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000237 | 363428 | 373840 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009339
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 26 | 66 | 1.10E-08 |
| PF07714.16 | Pkinase_Tyr | 453 | 722 | 6.80E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.380 |
| SRR2545915 | Juvenile tuber | 41.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.770 |
| SRR5643514 | five period of Gastrodia elata | 9.720 | |
| SRR5643515 | five period of Gastrodia elata | 11.390 | |
| SRR5643524 | five period of Gastrodia elata | 10.070 | |
| SRR5643525 | five period of Gastrodia elata | 17.160 | |
| SRR5643528 | five period of Gastrodia elata | 17.100 | |
| SRR5643658 | five period of Gastrodia elata | 18.180 | |
| SRR5643659 | five period of Gastrodia elata | 18.870 | |
| SRR5643660 | five period of Gastrodia elata | 20.330 | |
| SRR5643661 | five period of Gastrodia elata | 21.840 | |
| SRR5643662 | five period of Gastrodia elata | 18.010 | |
| SRR5643663 | five period of Gastrodia elata | 21.710 | |
| SRR5643664 | five period of Gastrodia elata | 17.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.50 |
| Juven | Juvenile tuber | 9.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.26 | |
| Mother_Juven | Mother tuber of Juvenile | 11.39 |