Gene detail

Detail information of GWHGAAEX009340/evm.TU.scaffold_244.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338733949\|ref\|YP_004672422.1\|	1.00E-178	lon protease [Simkania negevensis Z]
KOG	KOG2004	0	Mitochondrial ATP-dependent protease PIM1/LON
nr	gi\|743768574\|ref\|XP_010914564.1\|	0	PREDICTED: lon protease homolog, mitochondrial isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q69UZ3\|LONM_ORYSJ	0	Lon protease homolog, mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03120} (Precursor)
trEMBL	tr\|W1P2I8\|W1P2I8_AMBTC	0	Lon protease homolog, mitochondrial {ECO:0000256\|HAMAP-Rule:MF_03120}
TAIR	AT5G26860	0	lon protease 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000237	422761	511073	+

Transcript Sequence
>GWHTAAEX009340 AAAAACTTAAATAGTCGCACTTTATTCTTGAGGCCCAAGAAATCCTCATTGCTGGTACTGCGGTCTCTCCAACCCTCAAGGGTTTTACGTGAGGGTTTTTGATTGTGCGATTTGCATAAATTTGTGCTATTTTAAGCGTCAGGAAAAAGAAAATTGGGTTAAATTCTTCAAGATGGATGATAAAAACGTAATTGAGACACAAATCTAGGCTGAGCGGCGACAAAGATTGCAACTTTTCTCCATTCTTTCATTGCTTCTTGACCTATGCTGAAACTTGCGTCTTCTTCCTGCTTTCAAGGCAAATTGCGGAACCTATGCACTAGGTTTTCTGAAGGTGTTGCCAATGGAGGGCTCGAGAAGAGCCCCATGCTCCGGGTTATTGGTTCTCCGGGCAGTTGTGCTAGGAAAAAAGCTCTTTTTCGGCATTTTGCTTTATTCAGCTCGGATTCCAGCGAGGGGAATGGCGGCGCTGACAAGTCGATGGAAGCTAAAGTGGCGGAGGAAGTAGAGTACGCTTCTTCTGGCGCGGACGGGGAGGATGCCAAGGCTTCTTCGGCAATAGTGCCTACAATTCCACGGCCAGAGGATCACCTGTCGGTTATAGTTGTGCCACTCCCTCATCGGCCACTTTTCCCTGGTTTTTACATGCCAGTCTCCATTAAGGATTCTAAACTTTTGTCTGCTTTAGCTGAAAACTGTAAAAGATCGGTTACATATGCTGGCGCTTTTCTTTTCAAGGATGAGCCTGGAACTGATCCTAGTCTAGTGTCCGGTACAGAAACAGAGAAAAATATATATGAATTCAAGGGGAAAGAATTGTTTAACCGCTTACATGATGTTGGTACCCTGGCTCAGATAAGTAGTATACAAGGAAATGAAGTTTATCTTCTTGGTCACCGTCGTTTACGAAAAATAGAGATGGTTGTTGAAGACATTCTTACAGTTAAAGTTGATCACTTAAAGGATTTGCCCTATGACAAAGATGATGATGTGATAAAAGCAATCTATTTTGAAGTTATTTCAACTCTAAGAGATGTTTTGAAGATAAGTTCAGTTTGGAGAGAATATGCCAAAACATATTCTCGGTACATTGGTGATTTCACATACGGAAGGCTAGCAGATTTTGGAGCTGCTTTATCTATGGCTAACAAGTTACTTTGCCAGCAAGTGTTAGAAGAACTTGATGTGCAAAAGCGCTTAAAGCTCACTTTGGAGTTAATCAAGAAAGAGATAGAGATCAATAAAATACAGGAATCAATTGCAAAAGCCATTGAGGAAAAAATATCTGGTGAACAACGACGATATCTTTTAAACGAACAGTTAAAAGCAATCAAGAAGGAGCTTGGCTTAGAAACTGATGACAAAACAGCACTTTCTGCCAAGTTTAGAGAAAGGATTGAATCAAAAAAGGATAGATGTCCTCCTCATGTATTGCAGGTTATAGAAGAAGAGCTTACGAAGCTCCAGCTGTTGGAAGCCAGCTCTAGCGAATTCAATGTTACTCGAAATTACCTTGACTGGCTTACAGCCTTACCATGGGGAGAGTACAGTGATGAAAATTTTGACATTCATCATGCGCAAAAGATTTTAGATGCGGATCATTATGGCTTATCTGATGTGAAGGAAAGAATTCTTGAATTTATAGCAGTTGGAAAATTAAGAGGAACTTCACATGGGAAAATCATATGCCTTTCGGGCCCCCCTGGAGTTGGCAAAACTAGTATTGGGCGTTCAATTGCACGTGCTCTGAATCGCAAATTTTATAGGTTTTCTGTAGGTGGCTTGGCTGATGTTGCTGAAATCAAGGGTCATCGACGAACTTACATTGGTGCAATGCCAGGAAAAATTGTCCAGTGCTTGAAAAATGTTGGAACAGCTAATCCTCTTGTTCTAATTGACGAAATTGACAAGTTAGGTAGAGGGCATGCTGGTGATCCAGCAAGTGCTTTGTTGGAACTTCTTGATCCTGAGCAAAATGTGAACTTCCTTGATCACTATTTAGATGTTCCTATTGATCTCTCAAAAGTACTCTTTGTTTGCACAGCAAATGTAATTGAGACAATTCCAAATCCTCTCTTGGACAGAATGGAAGTAATTGCGATTGCTGGCTATATAACTGATGAAAAGATGCATATTGCAAGGGGCTATTTGGAGAAGTCGACTCGTGAAGCTTGTGGCATCAAGCCTGAACAAGTAGAAGTAACAGATGCAGCTCTGCTGGATCTCATAGAAAATTATTGCCGAGAGGCTGGAGTGCGGAATCTGCAAAAGCAAATTGAGAAAATATACCGCAAGATAGCTCTTCAACTTGTGCGCAAGGGAACAACTAAGGACCCAATTACTAGTGCTAATAATCAGACAGGTGAACCGAAAGAATTCAATGGTTCATCTAAATCTGATCATACTGAAGCAGTTGATTCCCAAATCATTGGAAAATCGGATGACGCATCAAGTGAAAATGTTGATACTGCTGCTATTTTAGAATCCAGAAACATAGCTAATCGTGAAGAAATTGCTGAAACTTTGGAGGAGATTGGAAAAGTAGAAGCTGATCTATCCTCAGACCTAAGAACAGTTGGCAAACAAATCGAATCAGAGGTAAGTGAAGTGATAGATATAAGAGAAGAAGCTGCTGAGGATAATGTGGTTGATAAAGTTGTAATTGATGTTTCAAATTTGGTTGACTTTGTGGGTAAACCAGTATTTCACGCTGATAAAATTTATGACGAAACCCCTATAGGAGTTGTTATGGGACTAGCATGGACTGCTATGGGCGGATCAACGCTATATATTGAAACCACATTGGTGGAGCAAGGAGAAGGCAAAGGTGCACTTCATATTACAGGCCAACTAGGAGATGTAATGAAGGAGAGTGCCCAGATTGCCCACACAGTTGCTCGCACAATATTAATGGAGAAAGCTCCAGATAACCCATTTTTTGCAAACTCAAAGCTTCATCTGCATGTTCCAGCCGGCGCAACGCCTAAGGATGGACCTAGTGCTGGGTGCACTATGATTACATCATTACTTTCCCTTGCAACAAAGAGGCCCGCAAGAAAGGATCTTGCTATGACCGGCGAAGTGACGTTGACTGGACGAATTCTTCCGATCGGTGGGGTTAAGGAGAAGACTATAGCAGCCCGGAGAAGTGAGGTGAAGATTATCATACTGCCGGCCGCAAATAGAAGAGACTTTGATGAGCTTTCAGACAACGTGAAAGAAGGCCTTGATGTTCATTTTGTTAACGATTACGGTCAGATTTTTGAGCTTGCTTTTGGAAGCAACGTCTGCTCTGAAAGCTAATGCGATGATTGTTTGGAAAATTTTTGGTTCTGCTGTTTCAATTCCCAGCAGCCTTACAACATCAAACTTATTATTGCTAATTTTTTTTGTTTTTGATAAGCCAAGCTCTAACAGCTTCCCATTTGTTGTTGGTTCCATTATTTCATCAGTGATCTGCATCAATTGAAATTTTGCATTATTCTTTGCTTCTCAAGGCATATATAAGCTAACCAGTTGCCTTAAGTTTGTGTGCTTGATACTAATTGAAGCATTCAACATTTGATTTTTGATGATAAGTATAATTTTTCAAGC

Network for GWHGAAEX009340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02190.15	LON_substr_bdg	113	321	1.40E-27
PF00004.28	AAA	474	611	9.40E-21
PF05362.12	Lon_C	800	1004	7.80E-76

Protein Sequence

>GWHPAAEX009340
MLKLASSSCFQGKLRNLCTRFSEGVANGGLEKSPMLRVIGSPGSCARKKALFRHFALFSSDSSEGNGGADKSMEAKVAEEVEYASSGADGEDAKASSAIVPTIPRPEDHLSVIVVPLPHRPLFPGFYMPVSIKDSKLLSALAENCKRSVTYAGAFLFKDEPGTDPSLVSGTETEKNIYEFKGKELFNRLHDVGTLAQISSIQGNEVYLLGHRRLRKIEMVVEDILTVKVDHLKDLPYDKDDDVIKAIYFEVISTLRDVLKISSVWREYAKTYSRYIGDFTYGRLADFGAALSMANKLLCQQVLEELDVQKRLKLTLELIKKEIEINKIQESIAKAIEEKISGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERIESKKDRCPPHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTALPWGEYSDENFDIHHAQKILDADHYGLSDVKERILEFIAVGKLRGTSHGKIICLSGPPGVGKTSIGRSIARALNRKFYRFSVGGLADVAEIKGHRRTYIGAMPGKIVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNVNFLDHYLDVPIDLSKVLFVCTANVIETIPNPLLDRMEVIAIAGYITDEKMHIARGYLEKSTREACGIKPEQVEVTDAALLDLIENYCREAGVRNLQKQIEKIYRKIALQLVRKGTTKDPITSANNQTGEPKEFNGSSKSDHTEAVDSQIIGKSDDASSENVDTAAILESRNIANREEIAETLEEIGKVEADLSSDLRTVGKQIESEVSEVIDIREEAAEDNVVDKVVIDVSNLVDFVGKPVFHADKIYDETPIGVVMGLAWTAMGGSTLYIETTLVEQGEGKGALHITGQLGDVMKESAQIAHTVARTILMEKAPDNPFFANSKLHLHVPAGATPKDGPSAGCTMITSLLSLATKRPARKDLAMTGEVTLTGRILPIGGVKEKTIAARRSEVKIIILPAANRRDFDELSDNVKEGLDVHFVNDYGQIFELAFGSNVCSES

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0006515	Biological Process	misfolded or incompletely synthesized protein catabolic process
GO:0004252	Molecular Function	serine-type endopeptidase activity
GO:0004176	Molecular Function	ATP-dependent peptidase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.950
SRP064423	SRR2545915	Juvenile tuber	16.120
SRP108465	SRR5643513	five period of Gastrodia elata	16.400
	SRR5643514	five period of Gastrodia elata	16.770
	SRR5643515	five period of Gastrodia elata	14.910
	SRR5643524	five period of Gastrodia elata	14.370
	SRR5643525	five period of Gastrodia elata	9.410
	SRR5643528	five period of Gastrodia elata	14.060
	SRR5643658	five period of Gastrodia elata	11.510
	SRR5643659	five period of Gastrodia elata	13.510
	SRR5643660	five period of Gastrodia elata	12.930
	SRR5643661	five period of Gastrodia elata	11.530
	SRR5643662	five period of Gastrodia elata	13.690
	SRR5643663	five period of Gastrodia elata	13.530
	SRR5643664	five period of Gastrodia elata	12.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.370
SRP279888	Gastro	Gastrodia elata tuber	16.33
	Juven	Juvenile tuber	20.32
	Mother_Gastro	Mother tuber of Gastrodia elata	17.12
	Mother_Juven	Mother tuber of Juvenile	19.64