Detail information of GWHGAAEX009342/evm.TU.scaffold_244.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|470106611|ref|XP_004289657.1|1.02E-31PREDICTED: uncharacterized protein At4g28440-like [Fragaria vesca subsp. vesca]
Swissprottr|O49453|Y4844_ARATH1.00E-24Uncharacterized protein At4g28440
trEMBLtr|W9R7A6|W9R7A6_9ROSA4.00E-31Uncharacterized protein {ECO:0000313|EMBL:EXB75032.1}
TAIRAT1G237507.00E-27Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000237539751539960-
Transcript Sequence

Network for GWHGAAEX009342

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.540
SRR2545915Juvenile tuber25.940
SRP108465SRR5643513five period of Gastrodia elata146.080
SRR5643514five period of Gastrodia elata215.510
SRR5643515five period of Gastrodia elata239.140
SRR5643524five period of Gastrodia elata86.570
SRR5643525five period of Gastrodia elata494.120
SRR5643528five period of Gastrodia elata422.130
SRR5643658five period of Gastrodia elata299.170
SRR5643659five period of Gastrodia elata155.560
SRR5643660five period of Gastrodia elata180.430
SRR5643661five period of Gastrodia elata246.780
SRR5643662five period of Gastrodia elata310.740
SRR5643663five period of Gastrodia elata231.510
SRR5643664five period of Gastrodia elata203.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1155.960
SRR6049655Rhizomagastrodiae_C368-T10_good_1179.410
SRR6049656Rhizomagastrodiae_C368-T07_good_1319.870
SRR6049657Rhizomagastrodiae_C368-T07_good_1119.890
SRR6049658Rhizomagastrodiae_C368-T04_good_1125.990
SRR6049659Rhizomagastrodiae_C368-T04_good_1224.740
SRR6049660Rhizomagastrodiae_C368-T01_good_1155.980
SRR6049661Rhizomagastrodiae_C368-T04_good_1183.720
SRR6049662Rhizomagastrodiae_C368-T01_good_1477.580
SRR6049663Rhizomagastrodiae_C368-T01_good_1242.000
SRR6049664Rhizomagastrodiae_C368-T10_good_1217.560
SRR6049665Rhizomagastrodiae_C368-T10_good_1217.560
SRP279888GastroGastrodia elata tuber 1,039.45
JuvenJuvenile tuber159.42
Mother_GastroMother tuber of Gastrodia elata 802.25
Mother_JuvenMother tuber of Juvenile 205.81