Detail information of GWHGAAEX009343/evm.TU.scaffold_244.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|351726836|ref|NP_001236884.1|4.44E-38uncharacterized protein LOC100526985 [Glycine max]
Swissprottr|O49453|Y4844_ARATH6.00E-20Uncharacterized protein At4g28440
trEMBLtr|C6T2Y3|C6T2Y3_SOYBN2.00E-38Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G03750.1}
TAIRAT1G237508.00E-31Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000237558465560508-
Transcript Sequence

Network for GWHGAAEX009343

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.880
SRR2545915Juvenile tuber22.850
SRP108465SRR5643513five period of Gastrodia elata11.530
SRR5643514five period of Gastrodia elata8.570
SRR5643515five period of Gastrodia elata11.010
SRR5643524five period of Gastrodia elata9.240
SRR5643525five period of Gastrodia elata7.540
SRR5643528five period of Gastrodia elata15.290
SRR5643658five period of Gastrodia elata14.450
SRR5643659five period of Gastrodia elata11.370
SRR5643660five period of Gastrodia elata10.560
SRR5643661five period of Gastrodia elata7.570
SRR5643662five period of Gastrodia elata9.920
SRR5643663five period of Gastrodia elata8.270
SRR5643664five period of Gastrodia elata6.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.730
SRR6049655Rhizomagastrodiae_C368-T10_good_15.290
SRR6049656Rhizomagastrodiae_C368-T07_good_125.570
SRR6049657Rhizomagastrodiae_C368-T07_good_114.150
SRR6049658Rhizomagastrodiae_C368-T04_good_120.910
SRR6049659Rhizomagastrodiae_C368-T04_good_120.860
SRR6049660Rhizomagastrodiae_C368-T01_good_119.540
SRR6049661Rhizomagastrodiae_C368-T04_good_118.620
SRR6049662Rhizomagastrodiae_C368-T01_good_133.260
SRR6049663Rhizomagastrodiae_C368-T01_good_128.120
SRR6049664Rhizomagastrodiae_C368-T10_good_132.530
SRR6049665Rhizomagastrodiae_C368-T10_good_132.530
SRP279888GastroGastrodia elata tuber 9.53
JuvenJuvenile tuber1.51
Mother_GastroMother tuber of Gastrodia elata 13.24
Mother_JuvenMother tuber of Juvenile 2.54