Detail information of GWHGAAEX009349/evm.TU.scaffold_245.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03230TFIIF-interacting CTD phosphatases, including NLI-interacting factor
nrgi|743790063|ref|XP_010923073.1|0PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Elaeis guineensis]
Swissprottr|Q5YDB5|CPL2_ARATH0RNA polymerase II C-terminal domain phosphatase-like 2
trEMBLtr|I1NTH1|I1NTH1_ORYGL0Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0316100.1}
TAIRAT5G012700carboxyl-terminal domain (ctd) phosphatase-like 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002484076682463+
Transcript Sequence

Network for GWHGAAEX009349

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03031.17NIF2503643.10E-08
PF00035.25dsrm5065672.10E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.730
SRR2545915Juvenile tuber26.240
SRP108465SRR5643513five period of Gastrodia elata17.920
SRR5643514five period of Gastrodia elata17.890
SRR5643515five period of Gastrodia elata15.730
SRR5643524five period of Gastrodia elata15.160
SRR5643525five period of Gastrodia elata17.180
SRR5643528five period of Gastrodia elata14.590
SRR5643658five period of Gastrodia elata19.870
SRR5643659five period of Gastrodia elata16.260
SRR5643660five period of Gastrodia elata16.340
SRR5643661five period of Gastrodia elata15.510
SRR5643662five period of Gastrodia elata16.320
SRR5643663five period of Gastrodia elata16.870
SRR5643664five period of Gastrodia elata17.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.800
SRR6049655Rhizomagastrodiae_C368-T10_good_124.770
SRR6049656Rhizomagastrodiae_C368-T07_good_118.540
SRR6049657Rhizomagastrodiae_C368-T07_good_120.500
SRR6049658Rhizomagastrodiae_C368-T04_good_119.890
SRR6049659Rhizomagastrodiae_C368-T04_good_124.890
SRR6049660Rhizomagastrodiae_C368-T01_good_120.590
SRR6049661Rhizomagastrodiae_C368-T04_good_118.760
SRR6049662Rhizomagastrodiae_C368-T01_good_117.120
SRR6049663Rhizomagastrodiae_C368-T01_good_118.540
SRR6049664Rhizomagastrodiae_C368-T10_good_118.160
SRR6049665Rhizomagastrodiae_C368-T10_good_118.160
SRP279888GastroGastrodia elata tuber 13.45
JuvenJuvenile tuber19.15
Mother_GastroMother tuber of Gastrodia elata 10.09
Mother_JuvenMother tuber of Juvenile 16.15