Gene detail

Detail information of GWHGAAEX009358/evm.TU.scaffold_245.11

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|434394159\|ref\|YP_007129106.1\|	neutral invertase [Gloeocapsa sp. PCC 7428]
nr	gi\|743763416\|ref\|XP_010911892.1\|	PREDICTED: alkaline/neutral invertase CINV2-like [Elaeis guineensis]
Swissprot	tr\|Q69T31\|CINV1_ORYSJ	Cytosolic invertase 1 {ECO:0000303\|PubMed:18317796}
trEMBL	tr\|A0A067LHR3\|A0A067LHR3_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP46923.1}
TAIR	AT4G09510	cytosolic invertase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000248	317972	330831	+

Transcript Sequence
>GWHTAAEX009358 GTGAAGCTGATAGATGCGGGTGTCCATGGAATAAGTTTGCGAGATCCAGCTCTCGCTTCCACGAAATTTTCAGTTATCCTTTCAGGGTTTCAGGGAGTCAACTGATATAAGATTCAAATCCGCGACATTCGATTCCCTGATTGATGACTGATGATTTAAGATTTAAAATCGGTAGGGTTGTGGCAATTATAAAGAACACTGTGCGGCATGGACGGGATTTCAAGCATGAGGAAAGTGGCGTCACACTGTTCCATGGCAGATATTGATGAAGATCTGGATCTCGCGCGGTTGCTTGAGAAACCGAAGCATAACATCGAGCGTCAGAGATCCTGCGATGAGAGATCGCTCAGCGAGCTTTCTATTAACATTCGTGCTATTGATGGCTTCGAGAACATGTACTCTCCCAGCGGGATAAGGTCTGGCGGCTTCGATACTCCGGCGTCGTCTGCGAGGAATTCGTTCGAGCCGCACCCTATGATTGCTGAGGCCTGGGAGGCCTTTCGTCGTTCATTGGTTTTTTTTCGCAAGCAGCCTGTTGGAACGATTGCTGCTGTGAATCATGCTTCTGAGGAGGTTCTAAACTACGATCAGGTGTTTGTGCGTGATTTTGTGCCGAGCGCTTTAGCATTTCTAATGAACGGGGAGCCGGAGATTGTCAAAAATTTTCTTCTCAAAACTCTCCTTTTACAGGGTTGGGAAAAAAAGGTTGATCGTTTTCAACTTGGGGCGGGCGTACTGCCGGCGAGCTTCAAGGTTCTTCATGATCCTATTAGAAAAATTGATACTATAGTTGCGGATTTTGGTGAGAGTGCGATAGGCAGAGTTGCTCCTGTTGACTCTGGATTCTGGTGGATTATTCTGTTGCGGGCCTATACAAAGTCTACTGGAGATCTTTCTCTTGCTGAAACTCCGGAATGCCAAAAAGGAATGAGACTTATATTGACCCTGTGCTTATCAGAAGGATTTGACACATTCCCAACCTTACTTTGTGCTGATGGCTGCTCAATGATTGATAGGAGGATGGGTGTCTATGGGTATCCAATTGAGATCCAAGCACTTTTCTTTATGGCATTAAGGTGCGCATTGATAATGCTCAAACATGATGCTGAAGGCAAGGAATGTGTTGAGAGAATTGTGAAGCGTTTGCATGCTTTGAGTTATCACATGAGGAGCTACTTTTGGCTTGATTTCCAGCAACTAAATGACATTTATCGATATAAGACAGAGGAGTATTCACACACAGCAGTGAACAAATTTAATGTTATTCCTGACTCGATCCCTGAATGGGTTTTCGAGTTTATGCCTATTCGTGGCGGCTACTTCATTGGAAACGTGAGTCCTGCAAGGATGGACTTCAGATGGTTTGCCTTGGGGAATTGTATTGCTATTTTGTCATCGCTTGCCACTACTGAGCAGTCAATGGCCATAATGGACCTTATTGAAGCACGTTGGGAAGAGCTGGTTGGAGAAATGCCTCTAAAAATTACTTATCCGGCCCTTGAGGGCCATGAATGGATGATTGTCACTGGTTATGATCCCAAGAATACAAGATGGAGTTACCACAATGGAGGATCTTGGCCAGTGCTTCTTTGGCTGCTCACCGCGGCCTGCATAAAGACGGGCCGGCCGCAGATAGCTCGGCGGGCCATAGAACTTGCTGAGAGTCGACTTCAGAAGGACTGCTGGCCTGAATACTATGATGGCAAGTTGGGCAGGTTTGTAGGAAAGCAGGCTAGAAAGTTCCAGACTTGGTCCATCTCAGGCTATCTTGTGGCTAAGATGATGCTGGAGGACCCCTCACATCTAGGCATGATCTCCCTTGAAGAAGACAAGGCAATGAAGCCCCTCATCAAGAGGTCCACTTCCTGGACCACTTGACCAGAGGTTACTAATTTGTTTCTGGTTCTTATTCTATGTATATTTCATGATATTTAGAAAAAAGTGATGTTTTATTTTAGGGATGTTTAGGCGTATAACATCCACAATTTTAAATAATACGAATCCAGCACCCAAAGTTAAATAGGATATGAGATTCCATGCACTTTAAAGGCGTTATTTGTAAATATTAAGGTTTGGGTATTAGATATGTATATTATAGAGTTTAGGATGTTATGTAGGTAAACTTCCTTCAATTTATGGGCTCATTTGCTGCAACATTAAACAAATATGTAATTTTTGCATCTTTTGAGCACTGTAAGATCAGTTTTTTAGTTATTCTGAAATGGAATGTTAAAGCAATTGTGTATGTAGATAGCTAGTGTTGTCTAAGTATGATTGCTAGAGGTTCTGGCTATAATAAAATGACTTTTTTTTTTATTTTTTTTATCTT

Network for GWHGAAEX009358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12899.6	Glyco_hydro_100	94	530	7.30E-211

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0033926	Molecular Function	glycopeptide alpha-N-acetylgalactosaminidase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.230
SRP064423	SRR2545915	Juvenile tuber	43.100
SRP108465	SRR5643513	five period of Gastrodia elata	29.050
	SRR5643514	five period of Gastrodia elata	24.740
	SRR5643515	five period of Gastrodia elata	29.880
	SRR5643524	five period of Gastrodia elata	28.400
	SRR5643525	five period of Gastrodia elata	41.910
	SRR5643528	five period of Gastrodia elata	38.870
	SRR5643658	five period of Gastrodia elata	38.560
	SRR5643659	five period of Gastrodia elata	29.950
	SRR5643660	five period of Gastrodia elata	33.920
	SRR5643661	five period of Gastrodia elata	35.270
	SRR5643662	five period of Gastrodia elata	39.940
	SRR5643663	five period of Gastrodia elata	31.320
	SRR5643664	five period of Gastrodia elata	37.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.110
SRP279888	Gastro	Gastrodia elata tuber	24.21
	Juven	Juvenile tuber	26.47
	Mother_Gastro	Mother tuber of Gastrodia elata	33.89
	Mother_Juven	Mother tuber of Juvenile	32.52