Detail information of GWHGAAEX009359/evm.TU.scaffold_245.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|384208243|ref|YP_005593963.1|1.00E-12hypothetical protein Bint_0754 [Brachyspira intermedia PWS/A]
KOGKOG05535.00E-44TPR repeat-containing protein
nrgi|672124951|ref|XP_008785878.1|8.70E-112PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein [Phoenix dactylifera]
Swissprottr|Q84XU2|PPP5_ARATH6.00E-21Serine/threonine-protein phosphatase 5
trEMBLtr|A0A061FP45|A0A061FP45_THECC3.00E-99Tetratricopeptide repeat-like superfamily protein, putative isoform 2 {ECO:0000313|EMBL:EOY16284.1}
TAIRAT4G083205.00E-44Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000248332110374504+
Transcript Sequence

Network for GWHGAAEX009359

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00515.27TPR_12152485.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms136.020
SRR2545915Juvenile tuber109.300
SRP108465SRR5643513five period of Gastrodia elata52.680
SRR5643514five period of Gastrodia elata33.990
SRR5643515five period of Gastrodia elata37.490
SRR5643524five period of Gastrodia elata35.950
SRR5643525five period of Gastrodia elata39.520
SRR5643528five period of Gastrodia elata42.820
SRR5643658five period of Gastrodia elata48.780
SRR5643659five period of Gastrodia elata70.000
SRR5643660five period of Gastrodia elata86.450
SRR5643661five period of Gastrodia elata62.920
SRR5643662five period of Gastrodia elata75.010
SRR5643663five period of Gastrodia elata86.130
SRR5643664five period of Gastrodia elata87.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_174.090
SRR6049655Rhizomagastrodiae_C368-T10_good_148.370
SRR6049656Rhizomagastrodiae_C368-T07_good_156.180
SRR6049657Rhizomagastrodiae_C368-T07_good_187.780
SRR6049658Rhizomagastrodiae_C368-T04_good_191.300
SRR6049659Rhizomagastrodiae_C368-T04_good_1106.060
SRR6049660Rhizomagastrodiae_C368-T01_good_177.630
SRR6049661Rhizomagastrodiae_C368-T04_good_176.260
SRR6049662Rhizomagastrodiae_C368-T01_good_149.410
SRR6049663Rhizomagastrodiae_C368-T01_good_161.010
SRR6049664Rhizomagastrodiae_C368-T10_good_151.210
SRR6049665Rhizomagastrodiae_C368-T10_good_151.210
SRP279888GastroGastrodia elata tuber 59.95
JuvenJuvenile tuber54.17
Mother_GastroMother tuber of Gastrodia elata 34.20
Mother_JuvenMother tuber of Juvenile 41.23