Detail information of GWHGAAEX009361/evm.TU.scaffold_245.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG26003.00E-110U3 small nucleolar ribonucleoprotein (snoRNP) subunit - Mpp10p
nrgi|359491237|ref|XP_003634246.1|2.95E-162PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 [Vitis vinifera]
trEMBLtr|F6GSM4|F6GSM4_VITVI1.00E-162Putative uncharacterized protein {ECO:0000313|EMBL:CCB42971.1}
TAIRAT5G665403.00E-110Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000248391747420945+
Transcript Sequence

Network for GWHGAAEX009361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04006.11Mpp10205367.00E-106
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14559MPP10 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0006364Biological ProcessrRNA processing
GO:0005634Cellular Componentnucleus
GO:0034457Cellular ComponentMpp10 complex
GO:0005732Cellular Componentsmall nucleolar ribonucleoprotein complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.690
SRR2545915Juvenile tuber37.360
SRP108465SRR5643513five period of Gastrodia elata37.540
SRR5643514five period of Gastrodia elata39.020
SRR5643515five period of Gastrodia elata38.330
SRR5643524five period of Gastrodia elata39.510
SRR5643525five period of Gastrodia elata40.910
SRR5643528five period of Gastrodia elata63.040
SRR5643658five period of Gastrodia elata32.900
SRR5643659five period of Gastrodia elata37.570
SRR5643660five period of Gastrodia elata34.580
SRR5643661five period of Gastrodia elata30.950
SRR5643662five period of Gastrodia elata35.000
SRR5643663five period of Gastrodia elata32.080
SRR5643664five period of Gastrodia elata32.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.550
SRR6049655Rhizomagastrodiae_C368-T10_good_130.050
SRR6049656Rhizomagastrodiae_C368-T07_good_128.430
SRR6049657Rhizomagastrodiae_C368-T07_good_132.990
SRR6049658Rhizomagastrodiae_C368-T04_good_128.120
SRR6049659Rhizomagastrodiae_C368-T04_good_127.700
SRR6049660Rhizomagastrodiae_C368-T01_good_130.340
SRR6049661Rhizomagastrodiae_C368-T04_good_132.600
SRR6049662Rhizomagastrodiae_C368-T01_good_134.520
SRR6049663Rhizomagastrodiae_C368-T01_good_131.780
SRR6049664Rhizomagastrodiae_C368-T10_good_136.150
SRR6049665Rhizomagastrodiae_C368-T10_good_136.150
SRP279888GastroGastrodia elata tuber 42.46
JuvenJuvenile tuber60.63
Mother_GastroMother tuber of Gastrodia elata 42.14
Mother_JuvenMother tuber of Juvenile 81.31